covar 0.3.0

Calls physically-linked mutation clusters from wastewater amplicon sequencing data
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "covar"
version = "0.3.0"
authors = ["Dylan Pilz <dpilz@scripps.edu>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Calls physically-linked mutation clusters from wastewater amplicon sequencing data"
readme = "README.md"
license = "MIT OR Apache-2.0"

[[bin]]
name = "covar"
path = "src/main.rs"

[dependencies.bio]
version = "2.2.0"

[dependencies.bio-seq]
version = "0.14"
features = ["translation"]

[dependencies.clap]
version = "4.5.32"
features = ["derive"]

[dependencies.crossbeam]
version = "0.8.4"

[dependencies.indicatif]
version = "0.17.11"

[dependencies.polars]
version = "0.46.0"
features = [
    "lazy",
    "round_series",
]

[dependencies.rayon]
version = "1.11.0"

[dependencies.rust-htslib]
version = "0.49.0"

[dependencies.tempfile]
version = "3.22.0"