conshomfold 0.1.0

ConsHomfold, which Predicts RNA Single Secondary Structures to Consider Sparse RNA Structural Alignments
Documentation
>NW_007370667.1:6222981-6223121 Eptesicus fuscus isolate BU_THK_EF1 unplaced genomic scaffold, EptFus1.0 scaffold00017, whole genome shotgun sequence
GAUGCUCAUGUUUGAGUGGACUGACAUACUUGUUCCGCUCUAGCAGCACGUAAAUAUUGG
CGUAGUGAAAUAAACAUUAAACACCAAUAUUAUUGUGCUGCUUUAGCGUGACAGGGAUAU
AGCAACUACUUAUUUUUGUUU
>NC_000003.12:160404745-160404825 Homo sapiens chromosome 3, GRCh38.p13 Primary Assembly
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUAUUAAACACCAAUAUU
ACUGUGCUGCUUUAGUGUGAC
>NC_008807.1:c242919117-242919053 Monodelphis domestica chromosome 7, MonDom5, whole genome shotgun sequence
UAGCAGCACGUAAAUAUUGGCGUAGUGAAAUCAGUCUGAAACCCCAAUAUUACUGUGCUG
CUUUA
>NC_036882.1:158471367-158471446 Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 3, Clint_PTRv2, whole genome shotgun sequence
UUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUAUGUUAAACACCAAUAUUA
CUGUGCUGCUUUAGUGUGAC
>NC_009160.3:21041912-21041974 Equus caballus isolate Twilight breed thoroughbred chromosome 17, EquCab3.0, whole genome shotgun sequence
UAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUG
CUG
>NC_006616.3:26460807-26460871 Canis lupus familiaris breed boxer chromosome 34, CanFam3.1, whole genome shotgun sequence
UAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAAAUUAAACACCAAUAUUAUUGUGCUG
CUUUA
>NR_162754.1 Cricetulus griseus microRNA mir-16-2 (Mir16-2), microRNA
CAUACUUGUUCCGCUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACAC
CAAUAUUAUUGUGCUGCUUUAGUGUGACAGGCAUA
>NC_010453.5:17757606-17757684 Sus scrofa isolate TJ Tabasco breed Duroc chromosome 11, Sscrofa11.1, whole genome shotgun sequence
CAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAA
CUGUGCUGCUGAAGUAAGG
>NC_000069.6:69009902-69009996 Mus musculus strain C57BL/6J chromosome 3, GRCm38.p6 C57BL/6J
CAUGCUUGUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACAC
CAAUAUUAUUGUGCUGCUUUAGUGUGACAGGGAUA
>NC_041755.1:62678455-62678535 Macaca mulatta isolate AG07107 chromosome 2, Mmul_10, whole genome shotgun sequence
GUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAUGUAUUAAACACCAAUAUU
ACUGUGCUGCUUCAGUGUGAC
>NC_006096.5:c22340805-22340712 Gallus gallus breed Red Jungle Fowl isolate RJF #256 chromosome 9, GRCg6a
CCUACUUGUUCCGCCCUAGCAGCACGUAAAUAUUGGUGUAGUAAAAUAAACCUUAAACCC
CAAUAUUAUUGUGCUGCUUAAGCGUGGCAGAGAU