[−][src]Crate conshomfold
Modules
| utils |
Structs
| BA_SCORE_MAT | |
| BufWriter | Wraps a writer and buffers its output. |
| FastaRecord | |
| File | A reference to an open file on the filesystem. |
| HashMap | A hash map implemented with quadratic probing and SIMD lookup. |
| MeaSs | |
| Options | A description of the options that a program can handle. |
| Path | A slice of a path (akin to |
| PctStaProbMats | |
| Pool | A threadpool that acts as a handle to a number of threads spawned at construction. |
| RIBOSUM_BA_SCORE_MAT | |
| RIBOSUM_BPA_SCORE_MAT | |
| Reader | A FASTA reader. |
| SPECIAL_HL_DELTA_FES | |
| SaScoringParams | |
| SsFreeEnergyMats | |
| SsPartFuncMats | |
| SsProbMats | |
| StaFeParams | |
| StaPartFuncMats | |
| StaPartFuncMats4Posterior | |
| StaProbMats | |
| TmpPartFuncSets | |
| TmpPartFuncs |
Constants
Traits
| BufRead | A |
| Read | The |
| Seek | The |
| Write | A trait for objects which are byte-oriented sinks. |
Functions
| conshomfold | |
| consprob | |
| convert | |
| create_dir | Creates a new, empty directory at the provided path |
| from_utf8_unchecked⚠ | Converts a slice of bytes to a string slice without checking that the string contains valid UTF-8. |
| get_2_loop_fe | |
| get_abs_diff | |
| get_bpp_and_unpair_prob_mats | |
| get_hl_fe | |
| get_max_bp_span | |
| get_seq_len_diff | |
| get_special_hl_fe | |
| get_ss_part_func_mats | |
| get_sta_inside_part_func_mats | |
| get_sta_inside_part_func_mats_4_posterior | |
| get_sta_prob_mats | |
| get_sta_prob_mats_4_posterior | |
| get_tmp_part_func_set_mat | |
| get_tmp_part_func_set_mat_4_posterior | |
| invert_bp | |
| io_algo_4_prob_mats | |
| is_au_or_gu | |
| is_canonical | |
| is_rna_base | |
| logsumexp | |
| max | Compares and returns the maximum of two values. |
| mccaskill_algo | |
| min | Compares and returns the minimum of two values. |
| multizip | An iterator that generalizes .zip() and allows running multiple iterators in lockstep. |
| pct_of_prob_mats | |
| print_program_usage | |
| remove_small_bpps_from_bpp_mat | |
| scale | |
| sumormax | |
| write_prob_mat_sets |