codonrs 0.2.4

Calculate relative synonymous codon usage for coding DNA sequences in a fasta file

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mcgilmore/codonrs
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codonrs

Calculate relative synonymous codon usage (RSCU) for coding DNA sequences (CDS).

codonrs [Optional: -t <translation table>] -i <input.fasta> -o <prefix for output CSV files>

<translation table> - (Optional) an integer representing the translation table to use, following NCBI numbering. Defaults to 1.
input.fasta - a multi fasta file containing DNA sequences to be analysed.