codenexus 0.3.4

A queryable code knowledge graph tool built on LadybugDB and tree-sitter
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
// Copyright (c) 2026 Kirky.X. All rights reserved.
// SPDX-License-Identifier: MIT

//! Resolve-phase orchestration functions.
//!
//! Contains the top-level entry points for the resolve phase (ADR-011):
//! [`build_symbol_table`], [`resolve_all`], and [`prune_dangling_type_edges_vec`].
//! These orchestrate the individual resolvers (calls, dataflow, FFI, imports,
//! type resolution) and were factored out of `mod.rs` for clarity.

use crate::ir::ExtractResult;
use crate::model::{Edge, EdgeType, Graph};
use crate::resolve::calls::CallResolver;
use crate::resolve::dataflow::DataFlowResolver;
use crate::resolve::fqn::FqnGenerator;
use crate::resolve::imports::ImportResolver;
use crate::resolve::includes_graph::IncludesGraph;
use crate::resolve::symbol_table::{FileSymbolTable, ProjectSymbolTable, SymbolEntry};
use crate::resolve::type_resolver::TypeResolver;

// FFI resolution requires both C and Rust to be compiled in (gated with the
// `cross_lang` module). Skipped in leaner builds.
#[cfg(all(feature = "lang-c", feature = "lang-rust"))]
use crate::resolve::cross_lang::FfiResolver;

/// Edge types whose dangling targets are pruned after TypeResolver runs.
///
/// These represent type-reference relationships (inheritance/implementation/
/// usage). If the target can't be resolved to a project node, the edge is
/// noise (e.g. `impl Display for Foo` where `Display` is a std trait not
/// indexed in the project). Pruning matches gitnexus behavior.
const PRUNABLE_EDGE_TYPES: [EdgeType; 3] =
    [EdgeType::Extends, EdgeType::Implements, EdgeType::UsesType];

/// Removes type-reference edges whose targets are still dangling (not in
/// `graph.nodes`) after [`TypeResolver`] has attempted resolution.
///
/// This prunes IMPLEMENTS/Extends/UsesType edges to std/external types
/// (e.g. `impl Display for Foo`) that can't be resolved to project-defined
/// symbols, matching gitnexus behavior (only project-defined type
/// relationships are retained).
///
/// Returns the count of pruned edges.
fn prune_dangling_type_edges(graph: &mut Graph) -> usize {
    let before = graph.edge_count();
    let node_ids: std::collections::HashSet<String> = graph.nodes.keys().cloned().collect();
    prune_dangling_type_edges_vec(&mut graph.edges, &node_ids);
    before - graph.edge_count()
}

/// Prunes dangling type-reference edges from a `Vec<Edge>`.
///
/// This is the public entry point for callers that persist a separate edge
/// collection (e.g. `ResolvePhase` in `phases.rs` persists `all_edges`, not
/// `graph.edges`). The prune inside [`resolve_all`] only affects
/// `graph.edges`, so the persisted Vec must also be pruned to actually remove
/// dangling IMPLEMENTS/Extends/UsesType edges from the database.
///
/// Returns the count of pruned edges.
pub fn prune_dangling_type_edges_vec(
    edges: &mut Vec<Edge>,
    node_ids: &std::collections::HashSet<String>,
) -> usize {
    let before = edges.len();
    edges.retain(|edge| {
        !PRUNABLE_EDGE_TYPES.contains(&edge.edge_type) || node_ids.contains(&edge.target)
    });
    before - edges.len()
}

/// Builds a project-level symbol table from extraction results.
///
/// For each [`ExtractResult`], generates FQNs for all definition nodes and
/// registers them in both the file-level and project-level tables.
///
/// # Arguments
///
/// * `results` - The extraction results from the parse phase.
/// * `project` - The project name used as the FQN prefix.
///
/// # Returns
///
/// A [`ProjectSymbolTable`] containing all symbols indexed by name (global)
/// and by file path (file-scoped).
#[must_use]
pub fn build_symbol_table(results: &[ExtractResult], project: &str) -> ProjectSymbolTable {
    let mut table = ProjectSymbolTable::new();
    for result in results {
        let mut file_table = FileSymbolTable::new();
        for node in &result.nodes {
            let entity_name = &node.name;
            let language = node.language.unwrap_or(result.language);
            // Use the parser-generated qualified_name (includes disambiguator
            // like #tests) so symbol table FQNs match node IDs in the graph.
            // Falling back to FqnGenerator with None would drop the
            // disambiguator, causing edge source/target mismatch and
            // breaking delete_file_nodes_batch edge cleanup (ADR-014).
            let fqn = if node.qualified_name.is_empty() {
                FqnGenerator::generate(project, &result.file_path, entity_name, language, None)
            } else {
                node.qualified_name.clone()
            };
            let entry = SymbolEntry::new(
                entity_name.clone(),
                fqn,
                node.label,
                result.file_path.clone(),
                project,
            )
            .with_language(language)
            .with_exported(node.is_exported)
            .with_signature_opt(node.signature.clone());
            file_table.add(entry);
        }
        if !file_table.is_empty() {
            table.add_file_table(&result.file_path, file_table);
        }
    }
    table
}

/// Resolves all symbols: calls + dataflows + FFI + imports, returning resolved edges.
///
/// This is the top-level orchestration function for the resolve phase
/// (ADR-011). It runs [`CallResolver`] to produce CALLS edges,
/// [`DataFlowResolver`] to produce DataFlows edges, [`FfiResolver`] to
/// produce FfiCalls edges (ADD §7.4), [`ImportResolver`] to produce IMPORTS
/// edges (DDD §7.2), and [`TypeResolver`] to fix dangling type edges,
/// adding all resolved edges to the graph.
///
/// # Arguments
///
/// * `results` - The extraction results from the parse phase.
/// * `symbol_table` - The project-level symbol table built from `results`.
/// * `project` - The project name.
/// * `graph` - The graph to add resolved edges to.
/// * `includes_graph` - C++ `#include` graph for scope-aware call resolution
///   (BUG-C4 fix, v0.3.0). Built by `build_includes_edges` before this call.
///
/// # Returns
///
/// A vector of all resolved edges (also added to `graph`).
pub fn resolve_all(
    results: &[ExtractResult],
    symbol_table: &ProjectSymbolTable,
    project: &str,
    graph: &mut Graph,
    includes_graph: &IncludesGraph,
) -> Vec<Edge> {
    let mut edges = Vec::new();
    let call_resolver =
        CallResolver::new(symbol_table, project).with_includes_graph(includes_graph.clone());
    edges.extend(call_resolver.resolve_calls(results, graph));
    let df_resolver = DataFlowResolver::new(symbol_table, project);
    edges.extend(df_resolver.resolve_dataflows(results, graph));
    // FFI resolution requires both C and Rust to be compiled in (gated with
    // the `cross_lang` module). Skipped in leaner builds.
    #[cfg(all(feature = "lang-c", feature = "lang-rust"))]
    {
        let ffi_resolver = FfiResolver::new(symbol_table, project);
        edges.extend(ffi_resolver.resolve_ffi(results, graph));
    }
    // Import resolution creates File → File IMPORTS edges from ImportInfo
    // records extracted by the parse phase (DDD §7.2). Runs after the other
    // resolvers; needs File nodes already in the graph (created by the scope
    // phase).
    let import_resolver = ImportResolver::new(project);
    edges.extend(import_resolver.resolve_imports(results, graph));
    // Type resolution fixes dangling Extends/Implements/UsesType edges
    // (design.md H6). Runs after other resolvers so it can fix edges created
    // by the parse phase. Returns the list of fixed edges (already mutated
    // in `graph`).
    let type_resolver = TypeResolver::new(symbol_table);
    edges.extend(type_resolver.resolve_types(results, graph));
    // Prune type-reference edges that TypeResolver could not resolve (e.g.
    // std trait impls like `impl Display for Foo`). These dangling edges
    // are noise — the target doesn't exist in the project graph.
    prune_dangling_type_edges(graph);
    edges
}

#[cfg(all(
    test,
    feature = "lang-c",
    feature = "lang-python",
    feature = "lang-rust",
    feature = "lang-typescript"
))]
mod tests {
    use super::*;
    use crate::ir::{CallInfo, ImportInfo};
    use crate::model::{EdgeType, Language, Node, NodeLabel};

    fn make_node(name: &str, label: NodeLabel, language: Language) -> Node {
        // qualified_name left empty so build_symbol_table falls back to
        // FqnGenerator::generate (matching pre-fix behaviour for these
        // legacy tests). Tests that need a disambiguator use make_node_with_fqn.
        let mut node = Node::builder(label, name, String::new())
            .language(language)
            .build();
        node.qualified_name.clear();
        node
    }

    /// Creates a node with a proper FQN as qualified_name (matching what
    /// the parser would set), so build_symbol_table uses it directly.
    fn make_node_with_fqn(
        name: &str,
        label: NodeLabel,
        language: Language,
        file_path: &str,
        project: &str,
        disambiguator: Option<&str>,
    ) -> Node {
        let qn = FqnGenerator::generate(project, file_path, name, language, disambiguator);
        Node::builder(label, name, qn).language(language).build()
    }

    fn make_result(file_path: &str, language: Language, nodes: Vec<Node>) -> ExtractResult {
        let mut result = ExtractResult::new(file_path, language);
        result.nodes = nodes;
        result
    }

    // --- build_symbol_table ---

    #[test]
    fn build_from_empty_results() {
        let table = build_symbol_table(&[], "proj");
        assert_eq!(table.file_count(), 0);
        assert_eq!(table.symbol_count(), 0);
    }

    #[test]
    fn build_from_single_result_single_node() {
        let node = make_node("parse", NodeLabel::Function, Language::Rust);
        let result = make_result("src/main.rs", Language::Rust, vec![node]);
        let table = build_symbol_table(&[result], "myproject");
        assert_eq!(table.file_count(), 1);
        assert_eq!(table.symbol_count(), 1);
        let entries = table.lookup("parse");
        assert_eq!(entries.len(), 1);
        assert_eq!(entries[0].qn, "myproject.src.main.rs.parse");
        assert_eq!(entries[0].file_path, "src/main.rs");
        assert_eq!(entries[0].language, Some(Language::Rust));
    }

    #[test]
    fn build_from_multiple_results() {
        let r1 = make_result(
            "src/main.rs",
            Language::Rust,
            vec![make_node("main", NodeLabel::Function, Language::Rust)],
        );
        let r2 = make_result(
            "src/utils.rs",
            Language::Rust,
            vec![make_node("helper", NodeLabel::Function, Language::Rust)],
        );
        let table = build_symbol_table(&[r1, r2], "proj");
        assert_eq!(table.file_count(), 2);
        assert_eq!(table.symbol_count(), 2);
        assert_eq!(table.lookup("main")[0].qn, "proj.src.main.rs.main");
        assert_eq!(table.lookup("helper")[0].qn, "proj.src.utils.rs.helper");
    }

    #[test]
    fn build_generates_correct_fqns() {
        let r1 = make_result(
            "src/deep/file.rs",
            Language::Rust,
            vec![make_node("foo", NodeLabel::Function, Language::Rust)],
        );
        let table = build_symbol_table(&[r1], "proj");
        let entry = table.lookup_exact("foo").unwrap();
        assert_eq!(entry.qn, "proj.src.deep.file.rs.foo");
    }

    #[test]
    fn build_python_init_py_fqn() {
        let r = make_result(
            "src/pkg/__init__.py",
            Language::Python,
            vec![make_node("MyClass", NodeLabel::Class, Language::Python)],
        );
        let table = build_symbol_table(&[r], "proj");
        let entry = table.lookup_exact("MyClass").unwrap();
        assert_eq!(entry.qn, "proj.src.pkg.MyClass");
    }

    #[test]
    fn build_c_header_fqn() {
        let r = make_result(
            "include/header.h",
            Language::C,
            vec![make_node("MY_DEFINE", NodeLabel::Const, Language::C)],
        );
        let table = build_symbol_table(&[r], "proj");
        let entry = table.lookup_exact("MY_DEFINE").unwrap();
        assert_eq!(entry.qn, "proj.include.header.h.MY_DEFINE");
    }

    #[cfg(feature = "lang-fortran")]
    #[test]
    fn build_fortran_module_fqn_via_generate_for_module() {
        // Direct test of generate_for_module since build_symbol_table uses
        // generate() (top-level entities). Module-nested entities would be
        // handled by a higher-level resolver.
        let fqn =
            FqnGenerator::generate_for_module("proj", "src/mod.f90", "mymod", "my_func", None);
        assert_eq!(fqn, "proj.src.mod.f90.mymod.my_func");
    }

    #[test]
    fn build_symbols_added_to_correct_file_tables() {
        let r1 = make_result(
            "a.rs",
            Language::Rust,
            vec![make_node("foo", NodeLabel::Function, Language::Rust)],
        );
        let r2 = make_result(
            "b.rs",
            Language::Rust,
            vec![make_node("bar", NodeLabel::Function, Language::Rust)],
        );
        let table = build_symbol_table(&[r1, r2], "proj");
        assert_eq!(table.lookup_in_file("a.rs", "foo").len(), 1);
        assert!(table.lookup_in_file("a.rs", "bar").is_empty());
        assert_eq!(table.lookup_in_file("b.rs", "bar").len(), 1);
        assert!(table.lookup_in_file("b.rs", "foo").is_empty());
    }

    #[test]
    fn build_preserves_exported_flag() {
        let node = Node::builder(NodeLabel::Function, "foo", "qn")
            .language(Language::Rust)
            .is_exported(true)
            .build();
        let result = make_result("src/main.rs", Language::Rust, vec![node]);
        let table = build_symbol_table(&[result], "proj");
        let entry = table.lookup_exact("foo").unwrap();
        assert!(entry.is_exported);
    }

    #[test]
    fn build_preserves_signature() {
        let node = Node::builder(NodeLabel::Function, "foo", "qn")
            .language(Language::Rust)
            .signature("fn foo(x: i32) -> i32")
            .build();
        let result = make_result("src/main.rs", Language::Rust, vec![node]);
        let table = build_symbol_table(&[result], "proj");
        let entry = table.lookup_exact("foo").unwrap();
        assert_eq!(entry.signature.as_deref(), Some("fn foo(x: i32) -> i32"));
    }

    #[test]
    fn build_preserves_label() {
        let node = make_node("MyClass", NodeLabel::Class, Language::Rust);
        let result = make_result("src/main.rs", Language::Rust, vec![node]);
        let table = build_symbol_table(&[result], "proj");
        let entry = table.lookup_exact("MyClass").unwrap();
        assert_eq!(entry.label, NodeLabel::Class);
    }

    #[test]
    fn build_skips_empty_results() {
        let r1 = make_result("a.rs", Language::Rust, vec![]);
        let r2 = make_result(
            "b.rs",
            Language::Rust,
            vec![make_node("foo", NodeLabel::Function, Language::Rust)],
        );
        let table = build_symbol_table(&[r1, r2], "proj");
        assert_eq!(table.file_count(), 1);
        assert_eq!(table.symbol_count(), 1);
    }

    #[test]
    fn build_multiple_nodes_same_file() {
        let r = make_result(
            "src/main.rs",
            Language::Rust,
            vec![
                make_node("foo", NodeLabel::Function, Language::Rust),
                make_node("bar", NodeLabel::Function, Language::Rust),
                make_node("MyClass", NodeLabel::Class, Language::Rust),
            ],
        );
        let table = build_symbol_table(&[r], "proj");
        assert_eq!(table.symbol_count(), 3);
        assert_eq!(table.file_count(), 1);
        assert_eq!(table.lookup("foo").len(), 1);
        assert_eq!(table.lookup("bar").len(), 1);
        assert_eq!(table.lookup("MyClass").len(), 1);
    }

    #[test]
    fn build_cross_file_lookup() {
        let r1 = make_result(
            "a.rs",
            Language::Rust,
            vec![make_node("foo", NodeLabel::Function, Language::Rust)],
        );
        let r2 = make_result(
            "b.rs",
            Language::Rust,
            vec![make_node("foo", NodeLabel::Function, Language::Rust)],
        );
        let table = build_symbol_table(&[r1, r2], "proj");
        let results = table.lookup("foo");
        assert_eq!(results.len(), 2);
    }

    #[test]
    fn build_uses_result_language_when_node_has_none() {
        let mut node = make_node("foo", NodeLabel::Function, Language::Rust);
        node.language = None;
        let result = make_result("src/main.rs", Language::Rust, vec![node]);
        let table = build_symbol_table(&[result], "proj");
        let entry = table.lookup_exact("foo").unwrap();
        assert_eq!(entry.language, Some(Language::Rust));
    }

    #[test]
    fn build_ignores_imports_and_calls() {
        let mut result = ExtractResult::new("src/main.rs", Language::Rust);
        result
            .nodes
            .push(make_node("foo", NodeLabel::Function, Language::Rust));
        result.imports.push(ImportInfo {
            source_file: "std::io".to_string(),
            imported_names: vec!["println".to_string()],
            line: 1,
        });
        result.calls.push(CallInfo {
            caller_qn: Some("foo".to_string()),
            callee_name: "println".to_string(),
            line: 3,
            args: vec![],
        });
        let table = build_symbol_table(&[result], "proj");
        // Only the node should be in the symbol table.
        assert_eq!(table.symbol_count(), 1);
        assert_eq!(table.lookup("foo").len(), 1);
        assert!(table.lookup("println").is_empty());
    }

    #[test]
    fn build_typescript_fqn() {
        let r = make_result(
            "src/components/Button.tsx",
            Language::TypeScript,
            vec![make_node("Button", NodeLabel::Class, Language::TypeScript)],
        );
        let table = build_symbol_table(&[r], "proj");
        let entry = table.lookup_exact("Button").unwrap();
        assert_eq!(entry.qn, "proj.src.components.Button.tsx.Button");
    }

    #[test]
    fn build_normalizes_dot_slash_path() {
        let r = make_result(
            "./src/main.rs",
            Language::Rust,
            vec![make_node("foo", NodeLabel::Function, Language::Rust)],
        );
        let table = build_symbol_table(&[r], "proj");
        let entry = table.lookup_exact("foo").unwrap();
        assert_eq!(entry.qn, "proj.src.main.rs.foo");
    }

    #[test]
    fn build_exported_lookup_works() {
        let node = Node::builder(NodeLabel::Function, "foo", "qn")
            .language(Language::Rust)
            .is_exported(true)
            .build();
        let result = make_result("src/main.rs", Language::Rust, vec![node]);
        let table = build_symbol_table(&[result], "proj");
        let exported = table.lookup_exported("foo");
        assert_eq!(exported.len(), 1);
    }

    #[test]
    fn build_all_symbols_returns_all() {
        let r = make_result(
            "src/main.rs",
            Language::Rust,
            vec![
                make_node("foo", NodeLabel::Function, Language::Rust),
                make_node("bar", NodeLabel::Function, Language::Rust),
            ],
        );
        let table = build_symbol_table(&[r], "proj");
        let all = table.all_symbols();
        assert_eq!(all.len(), 2);
    }

    #[test]
    fn build_preserves_project_field() {
        let node = make_node("foo", NodeLabel::Function, Language::Rust);
        let result = make_result("src/main.rs", Language::Rust, vec![node]);
        let table = build_symbol_table(&[result], "myproject");
        let entry = table.lookup_exact("foo").unwrap();
        assert_eq!(entry.project, "myproject");
    }

    // --- resolve_all orchestration ---

    #[test]
    fn resolve_all_combines_calls_and_dataflows() {
        let foo_qn = FqnGenerator::generate("proj", "a.rs", "foo", Language::Rust, None);
        let bar_qn = FqnGenerator::generate("proj", "a.rs", "bar", Language::Rust, None);
        let foo_node = Node::builder(NodeLabel::Function, "foo", foo_qn.clone())
            .language(Language::Rust)
            .file_path("a.rs")
            .is_exported(true)
            .build();
        let bar_node = Node::builder(NodeLabel::Function, "bar", bar_qn.clone())
            .language(Language::Rust)
            .file_path("a.rs")
            .is_exported(true)
            .build();

        let mut result = ExtractResult::new("a.rs", Language::Rust);
        result.nodes = vec![foo_node, bar_node];
        result.calls.push(CallInfo {
            caller_qn: Some(foo_qn.clone()),
            callee_name: "bar".to_string(),
            line: 5,
            args: vec![],
        });
        result.assignments.push(crate::parse::AssignInfo {
            target_name: "x".to_string(),
            source_name: "bar".to_string(),
            line: 6,
            is_return_assign: true,
        });

        let results = vec![result];
        let table = build_symbol_table(&results, "proj");
        let mut graph = Graph::new();
        // Add nodes to graph with qn as id.
        for r in &results {
            for node in &r.nodes {
                let qn =
                    FqnGenerator::generate("proj", &r.file_path, &node.name, Language::Rust, None);
                let mut g = node.clone();
                g.id = qn.clone();
                g.qualified_name = qn;
                graph.add_node(g);
            }
        }

        let edges = resolve_all(&results, &table, "proj", &mut graph, &IncludesGraph::new());

        // Should have 1 CALLS edge + 1 DataFlows edge = 2 total.
        assert_eq!(edges.len(), 2);
        assert_eq!(graph.edge_count(), 2);

        let calls_count = edges
            .iter()
            .filter(|e| e.edge_type == crate::model::EdgeType::Calls)
            .count();
        let dataflows_count = edges
            .iter()
            .filter(|e| e.edge_type == crate::model::EdgeType::DataFlows)
            .count();
        assert_eq!(calls_count, 1);
        assert_eq!(dataflows_count, 1);

        // Verify CALLS edge: foo -> bar
        let call_edge = edges
            .iter()
            .find(|e| e.edge_type == crate::model::EdgeType::Calls)
            .unwrap();
        assert_eq!(call_edge.source, foo_qn);
        assert_eq!(call_edge.target, bar_qn);
    }

    #[test]
    fn resolve_all_empty_results_returns_empty() {
        let table = ProjectSymbolTable::new();
        let mut graph = Graph::new();
        let edges = resolve_all(&[], &table, "proj", &mut graph, &IncludesGraph::new());
        assert!(edges.is_empty());
        assert_eq!(graph.edge_count(), 0);
    }

    #[test]
    fn resolve_all_adds_edges_to_graph() {
        let foo_qn = FqnGenerator::generate("proj", "a.rs", "foo", Language::Rust, None);
        let foo_node = Node::builder(NodeLabel::Function, "foo", foo_qn.clone())
            .language(Language::Rust)
            .file_path("a.rs")
            .is_exported(true)
            .build();

        let mut result = ExtractResult::new("a.rs", Language::Rust);
        result.nodes = vec![foo_node];
        result.calls.push(CallInfo {
            caller_qn: Some(foo_qn.clone()),
            callee_name: "foo".to_string(),
            line: 5,
            args: vec![],
        });

        let results = vec![result];
        let table = build_symbol_table(&results, "proj");
        let mut graph = Graph::new();
        for r in &results {
            for node in &r.nodes {
                let qn =
                    FqnGenerator::generate("proj", &r.file_path, &node.name, Language::Rust, None);
                let mut g = node.clone();
                g.id = qn.clone();
                g.qualified_name = qn;
                graph.add_node(g);
            }
        }

        resolve_all(&results, &table, "proj", &mut graph, &IncludesGraph::new());

        // The self-call edge should be in the graph.
        assert_eq!(graph.edge_count(), 1);
        let neighbors = graph.neighbors(&foo_qn, Some(crate::model::EdgeType::Calls));
        assert_eq!(neighbors.len(), 1);
    }

    // --- Bug 1: build_symbol_table must use node.qualified_name (with
    // disambiguator) so symbol table FQNs match node IDs in the graph. ---

    #[test]
    fn build_symbol_table_uses_qualified_name_with_disambiguator() {
        // A function inside `mod tests` gets a #tests disambiguator in its
        // qualified_name (set by the parser). build_symbol_table must use
        // that qualified_name, not regenerate without the disambiguator.
        let node = make_node_with_fqn(
            "my_test",
            NodeLabel::Function,
            Language::Rust,
            "src/lib.rs",
            "proj",
            Some("tests"),
        );
        // The qualified_name should include #tests.
        assert_eq!(
            node.qualified_name, "proj.src.lib.rs.my_test#tests",
            "test setup: qualified_name must include disambiguator"
        );

        let result = make_result("src/lib.rs", Language::Rust, vec![node]);
        let table = build_symbol_table(&[result], "proj");
        let entry = table.lookup_exact("my_test").unwrap();
        // The symbol table FQN must match the node's qualified_name.
        assert_eq!(
            entry.qn, "proj.src.lib.rs.my_test#tests",
            "symbol table FQN must include disambiguator (matches node ID)"
        );
    }

    #[test]
    fn build_symbol_table_qualified_name_matches_node_id_for_deletion() {
        // Regression: when a node has a disambiguator, the symbol table FQN
        // must match the node ID so delete_file_nodes_batch can find edges.
        let node = make_node_with_fqn(
            "helper",
            NodeLabel::Function,
            Language::Rust,
            "src/util.rs",
            "proj",
            Some("impl"),
        );
        let expected_id = node.qualified_name.clone();
        let result = make_result("src/util.rs", Language::Rust, vec![node]);
        let table = build_symbol_table(&[result], "proj");
        let entry = table.lookup_exact("helper").unwrap();
        assert_eq!(
            entry.qn, expected_id,
            "FQN must match node ID for edge cleanup to work"
        );
    }

    // --- C1: prune unresolvable dangling type edges ---

    #[test]
    fn resolve_all_prunes_unresolvable_dangling_type_edges() {
        // C1 fix: std trait impls (Display, Debug, etc.) create dangling
        // IMPLEMENTS edges that TypeResolver can't resolve. These should be
        // pruned to match gitnexus behavior (only project-defined type
        // relationships). Resolvable edges (project-defined traits) must be
        // kept and resolved.
        let trait_qn = FqnGenerator::generate("proj", "a.rs", "MyTrait", Language::Rust, None);
        let trait_node = Node::builder(NodeLabel::Trait, "MyTrait", trait_qn.clone())
            .id(trait_qn.clone())
            .language(Language::Rust)
            .file_path("a.rs")
            .is_exported(true)
            .build();

        let foo_qn = FqnGenerator::generate("proj", "a.rs", "Foo", Language::Rust, None);
        let foo_node = Node::builder(NodeLabel::Struct, "Foo", foo_qn.clone())
            .id(foo_qn.clone())
            .language(Language::Rust)
            .file_path("a.rs")
            .is_exported(true)
            .build();

        let bar_qn = FqnGenerator::generate("proj", "b.rs", "Bar", Language::Rust, None);
        let bar_node = Node::builder(NodeLabel::Struct, "Bar", bar_qn.clone())
            .id(bar_qn.clone())
            .language(Language::Rust)
            .file_path("b.rs")
            .is_exported(true)
            .build();

        let result_a = make_result(
            "a.rs",
            Language::Rust,
            vec![trait_node.clone(), foo_node.clone()],
        );
        let result_b = make_result("b.rs", Language::Rust, vec![bar_node.clone()]);
        let results = vec![result_a, result_b];
        let table = build_symbol_table(&results, "proj");

        let mut graph = Graph::new();
        graph.add_node(trait_node);
        graph.add_node(foo_node);
        graph.add_node(bar_node);

        // Dangling: Foo implements Display (std trait, not in project)
        graph.add_edge(Edge::new(
            &foo_qn,
            "proj.a.rs.Display",
            EdgeType::Implements,
            "proj",
        ));
        // Resolvable: Bar implements MyTrait (in a.rs, TypeResolver should fix)
        graph.add_edge(Edge::new(
            &bar_qn,
            "proj.b.rs.MyTrait",
            EdgeType::Implements,
            "proj",
        ));

        assert_eq!(graph.edge_count(), 2, "precondition: 2 IMPLEMENTS edges");

        resolve_all(&results, &table, "proj", &mut graph, &IncludesGraph::new());

        let implements_edges: Vec<_> = graph
            .edges
            .iter()
            .filter(|e| e.edge_type == EdgeType::Implements)
            .collect();
        assert_eq!(
            implements_edges.len(),
            1,
            "dangling IMPLEMENTS edge should be pruned"
        );
        assert_eq!(
            implements_edges[0].target, trait_qn,
            "resolved edge target should be MyTrait"
        );
    }

    #[test]
    fn resolve_all_prunes_unresolvable_extends_and_uses_type() {
        // Same pruning applies to Extends and UsesType edges.
        let struct_qn = FqnGenerator::generate("proj", "a.rs", "Foo", Language::Rust, None);
        let struct_node = Node::builder(NodeLabel::Struct, "Foo", struct_qn.clone())
            .id(struct_qn.clone())
            .language(Language::Rust)
            .file_path("a.rs")
            .is_exported(true)
            .build();

        let result = make_result("a.rs", Language::Rust, vec![struct_node.clone()]);
        let results = vec![result];
        let table = build_symbol_table(&results, "proj");

        let mut graph = Graph::new();
        graph.add_node(struct_node);

        graph.add_edge(Edge::new(
            &struct_qn,
            "proj.a.rs.BaseClass",
            EdgeType::Extends,
            "proj",
        ));
        graph.add_edge(Edge::new(
            &struct_qn,
            "proj.a.rs.ExternalType",
            EdgeType::UsesType,
            "proj",
        ));

        assert_eq!(graph.edge_count(), 2, "precondition: 2 dangling type edges");

        resolve_all(&results, &table, "proj", &mut graph, &IncludesGraph::new());

        assert_eq!(
            graph.edge_count(),
            0,
            "both dangling type edges should be pruned"
        );
    }

    #[test]
    fn resolve_all_keeps_non_type_edges_with_dangling_targets() {
        // CALLS edges with dangling targets should NOT be pruned — only
        // type-reference edges (Implements/Extends/UsesType) are pruned.
        let foo_qn = FqnGenerator::generate("proj", "a.rs", "foo", Language::Rust, None);
        let foo_node = Node::builder(NodeLabel::Function, "foo", foo_qn.clone())
            .id(foo_qn.clone())
            .language(Language::Rust)
            .file_path("a.rs")
            .is_exported(true)
            .build();

        let result = make_result("a.rs", Language::Rust, vec![foo_node.clone()]);
        let results = vec![result];
        let table = build_symbol_table(&results, "proj");

        let mut graph = Graph::new();
        graph.add_node(foo_node);

        graph.add_edge(Edge::new(
            &foo_qn,
            "proj.a.rs.external_fn",
            EdgeType::Calls,
            "proj",
        ));

        resolve_all(&results, &table, "proj", &mut graph, &IncludesGraph::new());

        let calls_count = graph
            .edges
            .iter()
            .filter(|e| e.edge_type == EdgeType::Calls)
            .count();
        assert_eq!(
            calls_count, 1,
            "CALLS edge with dangling target should NOT be pruned"
        );
    }

    // --- C1 fix: prune persisted edge Vec (not just graph.edges) ---
    // The caller (phases.rs ResolvePhase) persists `all_edges` (a Vec<Edge>),
    // not `graph.edges`. The prune inside resolve_all only affects
    // graph.edges, so the persisted Vec must also be pruned.

    #[test]
    fn prune_dangling_type_edges_vec_removes_dangling_type_edges() {
        let mut edges = vec![
            // dangling: target "Display" not in node_ids
            Edge::new(
                "proj.a.rs.Foo",
                "proj.a.rs.Display",
                EdgeType::Implements,
                "proj",
            ),
            // resolvable: target "MyTrait" in node_ids
            Edge::new(
                "proj.a.rs.Bar",
                "proj.a.rs.MyTrait",
                EdgeType::Implements,
                "proj",
            ),
            // non-type edge with dangling target — must NOT be pruned
            Edge::new("proj.a.rs.foo", "proj.a.rs.bar", EdgeType::Calls, "proj"),
        ];
        let mut node_ids = std::collections::HashSet::new();
        node_ids.insert("proj.a.rs.MyTrait".to_string());

        let pruned = prune_dangling_type_edges_vec(&mut edges, &node_ids);
        assert_eq!(pruned, 1, "1 dangling IMPLEMENTS edge should be pruned");
        assert_eq!(
            edges.len(),
            2,
            "2 edges remain (resolvable Implements + Calls)"
        );
        let implements: Vec<_> = edges
            .iter()
            .filter(|e| e.edge_type == EdgeType::Implements)
            .collect();
        assert_eq!(implements.len(), 1);
        assert_eq!(implements[0].target, "proj.a.rs.MyTrait");
    }

    #[test]
    fn prune_dangling_type_edges_vec_keeps_extends_and_uses_type_when_resolved() {
        let mut edges = vec![
            Edge::new("a", "proj.a.rs.Base", EdgeType::Extends, "proj"), // resolvable
            Edge::new("b", "proj.a.rs.Unknown", EdgeType::UsesType, "proj"), // dangling
        ];
        let mut node_ids = std::collections::HashSet::new();
        node_ids.insert("proj.a.rs.Base".to_string());

        let pruned = prune_dangling_type_edges_vec(&mut edges, &node_ids);
        assert_eq!(
            pruned, 1,
            "only the dangling UsesType edge should be pruned"
        );
        assert_eq!(edges.len(), 1);
        assert_eq!(edges[0].edge_type, EdgeType::Extends);
    }
}