codelens-mcp 1.9.38

Harness-native Rust MCP server for code intelligence — 107 tools, 25 languages, tree-sitter + hybrid semantic search, 6.1x fewer tokens than rg+cat on agent tasks
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
#[cfg(feature = "semantic")]
use codelens_engine::EmbeddingEngine;
use codelens_engine::{FileWatcher, GraphCache, LspSessionPool, ProjectRoot, SymbolIndex};
use std::collections::HashMap;
use std::path::{Path, PathBuf};
use std::sync::{Arc, Mutex, OnceLock};

use crate::agent_coordination::AgentCoordinationStore;
use crate::analysis_queue::{
    AnalysisWorkerQueue, HTTP_ANALYSIS_WORKER_COUNT, STDIO_ANALYSIS_WORKER_COUNT,
};
use crate::artifact_store::AnalysisArtifactStore;
use crate::error::CodeLensError;
use crate::preflight_store::RecentPreflightStore;
use crate::telemetry::ToolMetricsRegistry;
use crate::tool_defs::{ToolPreset, ToolProfile, ToolSurface};
use serde_json::Value;

mod analysis;
mod coordination;
mod embedding_host;
mod metrics_host;
mod preflight;
mod project_runtime;
mod session_host;
mod session_runtime;
mod watcher_health;

/// Default preflight TTL: 10 minutes. Override via CODELENS_PREFLIGHT_TTL_SECS.
/// NLAH (arxiv:2603.25723): overly strict verifiers hurt performance by -0.8~-8.4%.
/// Making TTL configurable lets agents tune verification overhead vs safety.
pub(crate) fn preflight_ttl_ms() -> u64 {
    std::env::var("CODELENS_PREFLIGHT_TTL_SECS")
        .ok()
        .and_then(|v| v.parse::<u64>().ok())
        .map(|secs| secs * 1000)
        .unwrap_or(10 * 60 * 1000) // default 10 min
}

pub(crate) use crate::agent_coordination::{
    ActiveAgentEntry, AgentWorkEntry, CoordinationCounts, CoordinationLockStats,
    CoordinationSnapshot, FileClaimEntry,
};
pub(crate) use crate::client_profile::{ClientProfile, EffortLevel};
pub(crate) use crate::runtime_types::{
    AnalysisArtifact, AnalysisJob, AnalysisReadiness, AnalysisVerifierCheck, RuntimeDaemonMode,
    RuntimeTransportMode, WatcherFailureHealth,
};

pub(super) fn push_unique_string(items: &mut Vec<String>, value: String) {
    if !items.iter().any(|existing| existing == &value) {
        items.push(value);
    }
}

pub(super) fn normalize_path_for_project(project_root: &Path, path: &str) -> String {
    let normalized = if Path::new(path).is_absolute() {
        PathBuf::from(path)
    } else {
        project_root.join(path)
    };
    normalized
        .strip_prefix(project_root)
        .map(|relative| relative.to_path_buf())
        .unwrap_or(normalized)
        .to_string_lossy()
        .replace('\\', "/")
}

// ── Application state ──────────────────────────────────────────────────

const PROJECT_CONTEXT_CACHE_LIMIT: usize = 4;

use self::project_runtime::{ProjectContextCache, ProjectRuntimeContext};

pub(crate) struct AppState {
    // Default project (set at startup, immutable)
    default_project: ProjectRoot,
    default_symbol_index: Arc<SymbolIndex>,
    default_graph_cache: Arc<GraphCache>,
    default_lsp_pool: Arc<LspSessionPool>,
    default_memories_dir: PathBuf,
    default_analysis_dir: PathBuf,
    default_audit_dir: PathBuf,
    default_watcher: Option<FileWatcher>,
    // Runtime project override (set by activate_project)
    project_override: std::sync::RwLock<Option<Arc<ProjectRuntimeContext>>>,
    project_context_cache: Mutex<ProjectContextCache>,
    transport_mode: Mutex<RuntimeTransportMode>,
    daemon_mode: Mutex<RuntimeDaemonMode>,
    client_profile: ClientProfile,
    effort_level: std::sync::atomic::AtomicU8,
    surface: Mutex<ToolSurface>,
    /// Global token budget for response size control.
    /// Tools that produce variable-length output respect this limit.
    pub(crate) token_budget: std::sync::atomic::AtomicUsize,
    artifact_store: AnalysisArtifactStore,
    job_store: crate::job_store::AnalysisJobStore,
    pub(crate) metrics: Arc<ToolMetricsRegistry>,
    /// Recent tool call names for context-aware suggestions (max 5).
    recent_tools: crate::recent_buffer::RecentRingBuffer,
    /// Recent file paths accessed in this session (max 20) for ranking boost.
    recent_files: crate::recent_buffer::RecentRingBuffer,
    /// Recent analysis IDs for cross-phase context (max 5).
    recent_analysis_ids: crate::recent_buffer::RecentRingBuffer,
    /// Doom-loop detection: per-session map of (tool_name, args_hash, consecutive_count, first_occurrence_ms).
    /// Keyed by logical session_id so concurrent HTTP sessions do not corrupt each other's counters.
    doom_loop_counter: Mutex<HashMap<String, (String, u64, usize, u64)>>,
    preflight_store: RecentPreflightStore,
    coord_store: Arc<AgentCoordinationStore>,
    analysis_queue: OnceLock<AnalysisWorkerQueue>,
    watcher_maintenance: Mutex<HashMap<String, usize>>,
    #[cfg_attr(not(feature = "http"), allow(dead_code))]
    project_execution_lock: Mutex<()>,
    #[cfg(feature = "semantic")]
    pub(crate) embedding: std::sync::RwLock<Option<EmbeddingEngine>>,
    /// Lazy-loaded SCIP precise backend, cached after first access.
    #[cfg(feature = "scip-backend")]
    scip_backend: OnceLock<Option<Arc<codelens_engine::ScipBackend>>>,
    /// Secondary (read-only) project indexes for cross-project queries.
    pub(crate) secondary_projects: Mutex<HashMap<String, SecondaryProject>>,
    #[cfg(feature = "http")]
    pub(crate) session_store: Option<crate::server::session::SessionStore>,
    /// Phase 4b (§capability-reporting follow-up): wall-clock time
    /// when the daemon started, as an RFC 3339 UTC string. Exposed
    /// by `get_capabilities` alongside `binary_build_time` so
    /// downstream tooling can detect "daemon is running an image
    /// older than the disk binary" — the Phase 4a failure mode.
    daemon_started_at: String,
}

/// A read-only project registered for cross-project queries.
pub(crate) struct SecondaryProject {
    pub project: ProjectRoot,
    pub index: Arc<SymbolIndex>,
}

/// Phase 4b (§capability-reporting follow-up): format the current
/// wall-clock time as an RFC 3339 UTC string
/// (`YYYY-MM-DDTHH:MM:SSZ`). Used to stamp `daemon_started_at` at
/// `AppState::build` so `get_capabilities` can report how long the
/// daemon has been alive vs the binary's own build timestamp.
///
/// Pure integer arithmetic, no `chrono` dependency — mirrors the
/// same algorithm as `build.rs::format_iso8601_utc`.
fn now_rfc3339_utc() -> String {
    let unix_seconds = std::time::SystemTime::now()
        .duration_since(std::time::UNIX_EPOCH)
        .map(|d| d.as_secs())
        .unwrap_or(0);
    let days = (unix_seconds / 86_400) as i64;
    let secs_in_day = unix_seconds % 86_400;
    let hour = secs_in_day / 3600;
    let minute = (secs_in_day % 3600) / 60;
    let second = secs_in_day % 60;
    let z = days + 719_468;
    let era = if z >= 0 { z } else { z - 146_096 } / 146_097;
    let doe = (z - era * 146_097) as u64;
    let yoe = (doe - doe / 1460 + doe / 36524 - doe / 146_096) / 365;
    let y = yoe as i64 + era * 400;
    let doy = doe - (365 * yoe + yoe / 4 - yoe / 100);
    let mp = (5 * doy + 2) / 153;
    let d = doy - (153 * mp + 2) / 5 + 1;
    let m = if mp < 10 { mp + 3 } else { mp - 9 };
    let year = y + (if m <= 2 { 1 } else { 0 });
    format!("{year:04}-{m:02}-{d:02}T{hour:02}:{minute:02}:{second:02}Z")
}

impl AppState {
    /// RFC 3339 UTC timestamp when the daemon started — captured
    /// once at `AppState::build` and inherited by worker clones.
    /// Phase 4b (§capability-reporting): exposed in
    /// `get_capabilities` so downstream callers can detect "daemon
    /// has been running since before the binary was rebuilt".
    pub(crate) fn daemon_started_at(&self) -> &str {
        &self.daemon_started_at
    }

    fn now_ms() -> u64 {
        std::time::SystemTime::now()
            .duration_since(std::time::UNIX_EPOCH)
            .unwrap_or_default()
            .as_millis() as u64
    }

    fn active_project_context(&self) -> Option<Arc<ProjectRuntimeContext>> {
        project_runtime::active_project_context(self)
    }

    fn build_project_runtime_context(
        project: ProjectRoot,
        start_watcher: bool,
    ) -> anyhow::Result<ProjectRuntimeContext> {
        project_runtime::build_project_runtime_context(project, start_watcher)
    }

    fn activate_project_context(&self, context: Option<Arc<ProjectRuntimeContext>>) {
        project_runtime::activate_project_context(self, context)
    }

    // ── Active project accessors (check override, fallback to default) ──

    /// Get the active project root. Clones the ProjectRoot (just a PathBuf).
    pub(crate) fn project(&self) -> ProjectRoot {
        self.active_project_context()
            .map(|context| context.project.clone())
            .unwrap_or_else(|| self.default_project.clone())
    }

    /// Get the active symbol index.
    pub(crate) fn symbol_index(&self) -> Arc<SymbolIndex> {
        self.active_project_context()
            .map(|context| Arc::clone(&context.symbol_index))
            .unwrap_or_else(|| Arc::clone(&self.default_symbol_index))
    }

    pub(crate) fn watcher_failure_health(&self) -> WatcherFailureHealth {
        watcher_health::watcher_failure_health(self)
    }

    pub(crate) fn prune_index_failures(&self) -> Result<WatcherFailureHealth, CodeLensError> {
        watcher_health::prune_index_failures(self)
    }

    /// Get the active graph cache.
    pub(crate) fn graph_cache(&self) -> Arc<GraphCache> {
        self.active_project_context()
            .map(|context| Arc::clone(&context.graph_cache))
            .unwrap_or_else(|| Arc::clone(&self.default_graph_cache))
    }

    /// Get the active memories directory.
    pub(crate) fn memories_dir(&self) -> PathBuf {
        self.active_project_context()
            .map(|context| context.memories_dir.clone())
            .unwrap_or_else(|| self.default_memories_dir.clone())
    }

    /// Get the active analysis cache directory.
    pub(crate) fn analysis_dir(&self) -> PathBuf {
        self.active_project_context()
            .map(|context| context.analysis_dir.clone())
            .unwrap_or_else(|| self.default_analysis_dir.clone())
    }

    #[allow(dead_code)]
    pub(crate) fn artifact_store(&self) -> &AnalysisArtifactStore {
        &self.artifact_store
    }

    pub(crate) fn audit_dir(&self) -> PathBuf {
        self.active_project_context()
            .map(|context| context.audit_dir.clone())
            .unwrap_or_else(|| self.default_audit_dir.clone())
    }

    pub(crate) fn watcher_stats(&self) -> Option<codelens_engine::WatcherStats> {
        self.active_project_context()
            .as_ref()
            .and_then(|context| context.watcher.as_ref().map(FileWatcher::stats))
            .or_else(|| self.default_watcher.as_ref().map(FileWatcher::stats))
    }

    pub(crate) fn watcher_running(&self) -> bool {
        self.watcher_stats()
            .map(|stats| stats.running)
            .unwrap_or(false)
    }

    /// Switch the active project at runtime. Creates a new index and graph cache.
    pub(crate) fn switch_project(&self, path: &str) -> anyhow::Result<String> {
        let project = ProjectRoot::new(path)?;
        let scope = project.as_path().to_string_lossy().to_string();
        let name = project
            .as_path()
            .file_name()
            .map(|n| n.to_string_lossy().to_string())
            .unwrap_or_else(|| path.to_string());

        if scope == self.default_project_scope() {
            self.activate_project_context(None);
            return Ok(name);
        }

        if let Some(current) = self.active_project_context()
            && current.project.as_path() == project.as_path()
        {
            return Ok(name);
        }

        let context = {
            let mut cache = self
                .project_context_cache
                .lock()
                .unwrap_or_else(|p| p.into_inner());
            if let Some(cached) = cache.get(&scope) {
                cached
            } else {
                let built = Arc::new(Self::build_project_runtime_context(project, true)?);
                cache.insert(scope.clone(), Arc::clone(&built));
                let active_scope = self.current_project_scope();
                let protected = [self.default_project_scope(), active_scope, scope.clone()];
                let protected_refs = protected.iter().map(String::as_str).collect::<Vec<_>>();
                let _evicted =
                    cache.evict_until_within_limit(PROJECT_CONTEXT_CACHE_LIMIT, &protected_refs);
                built
            }
        };
        self.activate_project_context(Some(context));
        Ok(name)
    }

    /// Reset to the default project.
    #[allow(dead_code)]
    pub(crate) fn reset_project(&self) {
        self.activate_project_context(None);
    }

    /// Check if running on the default project.
    #[allow(dead_code)]
    pub(crate) fn is_default_project(&self) -> bool {
        self.active_project_context().is_none()
    }

    /// Access the LSP session pool. Pool uses internal per-session locking.
    pub(crate) fn lsp_pool(&self) -> Arc<LspSessionPool> {
        self.active_project_context()
            .map(|context| Arc::clone(&context.lsp_pool))
            .unwrap_or_else(|| Arc::clone(&self.default_lsp_pool))
    }

    /// Acquire active tool surface with poison recovery.
    pub(crate) fn surface(&self) -> std::sync::MutexGuard<'_, ToolSurface> {
        self.surface
            .lock()
            .unwrap_or_else(|poisoned| poisoned.into_inner())
    }

    pub(crate) fn set_surface(&self, surface: ToolSurface) {
        *self
            .surface
            .lock()
            .unwrap_or_else(|poisoned| poisoned.into_inner()) = surface;
    }

    pub(crate) fn configure_daemon_mode(&self, daemon_mode: RuntimeDaemonMode) {
        *self
            .daemon_mode
            .lock()
            .unwrap_or_else(|poisoned| poisoned.into_inner()) = daemon_mode;
    }

    pub(crate) fn configure_transport_mode(&self, transport: &str) {
        let mode = RuntimeTransportMode::from_str(transport);
        *self
            .transport_mode
            .lock()
            .unwrap_or_else(|poisoned| poisoned.into_inner()) = mode;
        self.metrics.record_analysis_worker_pool(
            self.analysis_worker_limit(),
            self.analysis_cost_budget(),
            mode.as_str(),
        );
    }

    pub(crate) fn transport_mode(&self) -> RuntimeTransportMode {
        *self
            .transport_mode
            .lock()
            .unwrap_or_else(|poisoned| poisoned.into_inner())
    }

    pub(crate) fn daemon_mode(&self) -> RuntimeDaemonMode {
        *self
            .daemon_mode
            .lock()
            .unwrap_or_else(|poisoned| poisoned.into_inner())
    }

    pub(crate) fn client_profile(&self) -> ClientProfile {
        self.client_profile
    }

    pub(crate) fn effort_level(&self) -> EffortLevel {
        match self.effort_level.load(std::sync::atomic::Ordering::Relaxed) {
            0 => EffortLevel::Low,
            1 => EffortLevel::Medium,
            _ => EffortLevel::High,
        }
    }

    #[allow(dead_code)]
    pub(crate) fn set_effort_level(&self, level: EffortLevel) {
        let val = match level {
            EffortLevel::Low => 0u8,
            EffortLevel::Medium => 1,
            EffortLevel::High => 2,
        };
        self.effort_level
            .store(val, std::sync::atomic::Ordering::Relaxed);
    }

    pub(crate) fn mutation_allowed_in_runtime(&self) -> bool {
        !matches!(self.daemon_mode(), RuntimeDaemonMode::ReadOnly)
    }

    pub(crate) fn analysis_worker_limit(&self) -> usize {
        match self.transport_mode() {
            RuntimeTransportMode::Http => HTTP_ANALYSIS_WORKER_COUNT,
            RuntimeTransportMode::Stdio => STDIO_ANALYSIS_WORKER_COUNT,
        }
    }

    pub(crate) fn analysis_cost_budget(&self) -> usize {
        match self.transport_mode() {
            RuntimeTransportMode::Http => 3,
            RuntimeTransportMode::Stdio => 2,
        }
    }

    pub(crate) fn analysis_parallelism_for_profile(&self, profile_hint: Option<&str>) -> usize {
        let hinted_profile =
            profile_hint
                .and_then(ToolProfile::from_str)
                .or_else(|| match *self.surface() {
                    ToolSurface::Profile(profile) => Some(profile),
                    ToolSurface::Preset(_) => None,
                });
        let transport_limit = self.analysis_worker_limit();
        match hinted_profile {
            Some(ToolProfile::PlannerReadonly)
            | Some(ToolProfile::ReviewerGraph)
            | Some(ToolProfile::CiAudit) => transport_limit.min(HTTP_ANALYSIS_WORKER_COUNT),
            Some(ToolProfile::BuilderMinimal)
            | Some(ToolProfile::EvaluatorCompact)
            | Some(ToolProfile::RefactorFull)
            | Some(ToolProfile::WorkflowFirst)
            | None => 1,
        }
    }

    pub(crate) fn clone_for_worker(&self) -> Self {
        let project = self.project();
        let symbol_index = self.symbol_index();
        let graph_cache = self.graph_cache();
        let memories_dir = self.memories_dir();
        let analysis_dir = self.analysis_dir();
        let audit_dir = self.audit_dir();
        let lsp_pool = self.lsp_pool();
        Self {
            default_project: project.clone(),
            default_symbol_index: symbol_index,
            default_graph_cache: graph_cache,
            default_lsp_pool: lsp_pool,
            default_memories_dir: memories_dir,
            default_analysis_dir: analysis_dir.clone(),
            default_audit_dir: audit_dir,
            default_watcher: None,
            project_override: std::sync::RwLock::new(None),
            project_context_cache: Mutex::new(ProjectContextCache::default()),
            transport_mode: Mutex::new(self.transport_mode()),
            daemon_mode: Mutex::new(self.daemon_mode()),
            client_profile: self.client_profile,
            effort_level: std::sync::atomic::AtomicU8::new(
                self.effort_level.load(std::sync::atomic::Ordering::Relaxed),
            ),
            surface: Mutex::new(*self.surface()),
            token_budget: std::sync::atomic::AtomicUsize::new(self.token_budget()),
            artifact_store: AnalysisArtifactStore::new(analysis_dir.clone()),
            job_store: crate::job_store::AnalysisJobStore::new(analysis_dir.join("jobs")),
            metrics: Arc::clone(&self.metrics),
            recent_tools: crate::recent_buffer::RecentRingBuffer::new(5),
            recent_analysis_ids: crate::recent_buffer::RecentRingBuffer::new(5),
            doom_loop_counter: Mutex::new(HashMap::new()),
            recent_files: crate::recent_buffer::RecentRingBuffer::new(20),
            preflight_store: RecentPreflightStore::new(),
            // Coordination registry is shared across worker clones so async
            // analysis jobs observe the same active-agent set as the request
            // that spawned them.
            coord_store: Arc::clone(&self.coord_store),
            analysis_queue: OnceLock::new(),
            watcher_maintenance: Mutex::new(HashMap::new()),
            project_execution_lock: Mutex::new(()),
            secondary_projects: Mutex::new(HashMap::new()),
            #[cfg(feature = "semantic")]
            embedding: std::sync::RwLock::new(None),
            #[cfg(feature = "scip-backend")]
            scip_backend: OnceLock::new(),
            #[cfg(feature = "http")]
            session_store: None,
            // Phase 4b: workers inherit the parent daemon's start
            // time so `get_capabilities` stays consistent across
            // clones.
            daemon_started_at: self.daemon_started_at.clone(),
        }
    }

    pub(crate) fn new(project: ProjectRoot, preset: ToolPreset) -> Self {
        let context = Self::build_project_runtime_context(project, true)
            .expect("startup project context should initialize");

        let state = Self::build(context, preset);
        state.configure_transport_mode("stdio");
        state.artifact_store.cleanup_stale_dirs(Self::now_ms());
        let scope = state.current_project_scope();
        state
            .job_store
            .cleanup_stale_files(Self::now_ms(), Some(&scope));
        state
    }

    /// Lightweight constructor that skips file watcher and stale-file cleanup.
    /// Reduces thread/I/O pressure when many instances run in parallel (e.g. tests).
    #[cfg(test)]
    pub(crate) fn new_minimal(project: ProjectRoot, preset: ToolPreset) -> Self {
        let context = Self::build_project_runtime_context(project, false)
            .expect("test project context should initialize");

        let state = Self::build(context, preset);
        state.configure_transport_mode("stdio");
        state
    }

    fn build(context: ProjectRuntimeContext, preset: ToolPreset) -> Self {
        let default_project = context.project.clone();
        let default_symbol_index = Arc::clone(&context.symbol_index);
        let default_graph_cache = Arc::clone(&context.graph_cache);
        let default_lsp_pool = Arc::clone(&context.lsp_pool);
        let default_memories_dir = context.memories_dir.clone();
        let default_analysis_dir = context.analysis_dir.clone();
        let default_audit_dir = context.audit_dir.clone();
        let default_watcher = context.watcher;
        Self {
            default_project,
            default_symbol_index,
            default_graph_cache,
            default_lsp_pool,
            default_memories_dir,
            default_analysis_dir: default_analysis_dir.clone(),
            default_audit_dir,
            default_watcher,
            project_override: std::sync::RwLock::new(None),
            project_context_cache: Mutex::new(ProjectContextCache::default()),
            transport_mode: Mutex::new(RuntimeTransportMode::Stdio),
            daemon_mode: Mutex::new(RuntimeDaemonMode::Standard),
            client_profile: ClientProfile::detect(None),
            effort_level: std::sync::atomic::AtomicU8::new(match EffortLevel::detect() {
                EffortLevel::Low => 0,
                EffortLevel::Medium => 1,
                EffortLevel::High => 2,
            }),
            surface: Mutex::new(ToolSurface::Preset(preset)),
            token_budget: std::sync::atomic::AtomicUsize::new(
                crate::tool_defs::default_budget_for_preset(preset),
            ),
            artifact_store: AnalysisArtifactStore::new(default_analysis_dir.clone()),
            job_store: crate::job_store::AnalysisJobStore::new(default_analysis_dir.join("jobs")),
            metrics: Arc::new(ToolMetricsRegistry::new()),
            recent_tools: crate::recent_buffer::RecentRingBuffer::new(5),
            recent_analysis_ids: crate::recent_buffer::RecentRingBuffer::new(5),
            doom_loop_counter: Mutex::new(HashMap::new()),
            recent_files: crate::recent_buffer::RecentRingBuffer::new(20),
            preflight_store: RecentPreflightStore::new(),
            coord_store: Arc::new(AgentCoordinationStore::new()),
            analysis_queue: OnceLock::new(),
            watcher_maintenance: Mutex::new(HashMap::new()),
            project_execution_lock: Mutex::new(()),
            secondary_projects: Mutex::new(HashMap::new()),
            #[cfg(feature = "semantic")]
            embedding: std::sync::RwLock::new(None),
            #[cfg(feature = "scip-backend")]
            scip_backend: OnceLock::new(),
            #[cfg(feature = "http")]
            session_store: None,
            daemon_started_at: now_rfc3339_utc(),
        }
    }

    /// Register a secondary project for cross-project queries.
    pub(crate) fn add_secondary_project(&self, path: &str) -> anyhow::Result<String> {
        let project = ProjectRoot::new(path)?;
        let name = project
            .as_path()
            .file_name()
            .map(|n| n.to_string_lossy().to_string())
            .unwrap_or_else(|| path.to_string());
        let index = Arc::new(SymbolIndex::new(project.clone()));
        // Ensure it's indexed
        index.refresh_all()?;
        let mut map = self
            .secondary_projects
            .lock()
            .unwrap_or_else(|p| p.into_inner());
        map.insert(name.clone(), SecondaryProject { project, index });
        Ok(name)
    }

    /// Remove a secondary project.
    pub(crate) fn remove_secondary_project(&self, name: &str) -> bool {
        let mut map = self
            .secondary_projects
            .lock()
            .unwrap_or_else(|p| p.into_inner());
        map.remove(name).is_some()
    }

    /// Get a snapshot of secondary project names and paths.
    pub(crate) fn list_secondary_projects(&self) -> Vec<(String, String)> {
        let map = self
            .secondary_projects
            .lock()
            .unwrap_or_else(|p| p.into_inner());
        map.iter()
            .map(|(name, sp)| {
                (
                    name.clone(),
                    sp.project.as_path().to_string_lossy().to_string(),
                )
            })
            .collect()
    }

    /// Query symbols in a secondary project by name.
    pub(crate) fn query_secondary_project(
        &self,
        project_name: &str,
        symbol_name: &str,
        max_results: usize,
    ) -> anyhow::Result<Vec<codelens_engine::SymbolInfo>> {
        let map = self
            .secondary_projects
            .lock()
            .unwrap_or_else(|p| p.into_inner());
        let sp = map
            .get(project_name)
            .ok_or_else(|| anyhow::anyhow!("project '{}' not registered", project_name))?;
        sp.index
            .find_symbol(symbol_name, None, false, false, max_results)
    }
}

// ── Free functions (extracted from AppState for SRP) ─────────────────

/// Extract a symbol name hint from tool arguments by checking a priority
/// list of common field names (`name_path`, `symbol`, `symbol_name`,
/// `name`, `function_name`).
///
/// This is a pure function that does not need `AppState` — it was
/// originally an `&self` method but never referenced `self`.
pub(crate) fn extract_symbol_hint(arguments: &Value) -> Option<String> {
    for key in [
        "name_path",
        "symbol",
        "symbol_name",
        "name",
        "function_name",
    ] {
        if let Some(value) = arguments.get(key).and_then(|entry| entry.as_str()) {
            let trimmed = value.trim();
            if !trimmed.is_empty() {
                return Some(trimmed.to_owned());
            }
        }
    }
    None
}

#[cfg(test)]
mod tests {
    use super::*;

    use crate::test_helpers::fixtures::temp_project_root;

    #[test]
    fn switch_project_reuses_cached_symbol_index_and_lsp_pool() {
        let default_project = temp_project_root("default");
        let project_a = temp_project_root("a");
        let project_b = temp_project_root("b");
        let state = AppState::new_minimal(default_project, ToolPreset::Balanced);

        state
            .switch_project(project_a.as_path().to_str().unwrap())
            .unwrap();
        let first_index = state.symbol_index();
        let first_lsp_pool = state.lsp_pool();

        state
            .switch_project(project_b.as_path().to_str().unwrap())
            .unwrap();
        state
            .switch_project(project_a.as_path().to_str().unwrap())
            .unwrap();

        let reused_index = state.symbol_index();
        let reused_lsp_pool = state.lsp_pool();

        assert!(Arc::ptr_eq(&first_index, &reused_index));
        assert!(Arc::ptr_eq(&first_lsp_pool, &reused_lsp_pool));
    }
}