code-system-graph 1.0.2

//! MCP stdio delivery adapter.

use std::ffi::OsString;
use std::path::PathBuf;
use std::time::Duration;

use code_system_graph_core::{
    ChangeAnalysisOptions, ChangeImpactReport, ContractReport, ImpactReport, ImpactRequest, LocalContextResult, PullRequestInspection, PullRequestProviderKind, SearchReport
};
use code_system_graph_model::{
    FreshnessSummary, OverallFreshness, ToolEnvelope, ToolStatus, TraceReport
};
use code_system_graph_store_sqlite::{SqliteStore, StoreLock};
use rmcp::handler::server::router::tool::ToolRouter;
use rmcp::handler::server::wrapper::Parameters;
use rmcp::model::{
    Implementation, ListResourcesResult, PaginatedRequestParams, ReadResourceRequestParams, ReadResourceResponse, ReadResourceResult, Resource, ResourceContents, ServerCapabilities, ServerInfo
};
use rmcp::service::{RequestContext, RoleServer};
use rmcp::{ErrorData as McpError, Json, ServerHandler, tool, tool_handler, tool_router};

use crate::{
    CODEGRAPH_DISABLED_CODE, CODEGRAPH_DISABLED_MESSAGE, ChangesInput, CommunityReport, ExploreInput, PullRequestInput, ScanOverrides, SearchInput, TraceInput, add_manual_link_to_manifest, add_repository_to_manifest, analyze_workspace_changes, communities_workspace, explore_repository, impact_workspace, impact_workspace_with_codegraph, inspect_pull_request, remove_repository_from_manifest, scan_workspace_with_overrides, search_workspace, trace_workspace
};

#[path = "mcp_support/mod.rs"]
mod mcp_support;

use mcp_support::{
    ADMIN_TOOL_NAMES, AdminAudit, CacheCleanInput, CacheCleanReport, CommunitiesInput, ContractsInput, GraphStatusReport, JSON_MIME_TYPE, ManifestAdminReport, ManualLinkWriteInput, ResourceErrorKind, SourceContextInput, SourceContextReport, WorkspaceInput, WorkspaceUpdateInput, admin_audit_envelope, admin_mutation_envelope, configured_manifest_path, contracts_envelope, read_resource, resource_uris, source_context_envelope, status_envelope
};

const EXPLORE_TOOL_NAME: &str = "explore";

/// Trusted process-level policy for bounded local intelligence.
#[derive(Debug, Clone, Default)]
struct CodeGraphPolicy {
    enabled: bool,
    binary: Option<OsString>,
}

/// Workspace-scoped `Code System Graph` MCP server with an optional explicit admin profile.
#[derive(Debug, Clone)]
pub struct CodeSystemGraphServer {
    database_path: PathBuf,
    workspace: String,
    admin_enabled: bool,
    codegraph: CodeGraphPolicy,
    github_pull_requests_enabled: bool,
    bitbucket_pull_requests_enabled: bool,
    tool_router: ToolRouter<Self>,
}

#[tool_router(router = tool_router)]
impl CodeSystemGraphServer {
    /// Creates a read-only server for one configured workspace.
    #[must_use]
    pub fn new(database_path: PathBuf, workspace: String) -> Self {
        let mut tool_router = Self::tool_router();
        for name in ADMIN_TOOL_NAMES {
            tool_router.disable_route(name);
        }
        tool_router.disable_route(EXPLORE_TOOL_NAME);
        Self {
            database_path,
            workspace,
            admin_enabled: false,
            codegraph: CodeGraphPolicy::default(),
            github_pull_requests_enabled: false,
            bitbucket_pull_requests_enabled: false,
            tool_router,
        }
    }

    /// Enables or disables the explicit administrative MCP profile.
    ///
    /// Disabled routes are absent from discovery and cannot be called. Applications should map
    /// their trusted `CODE_SYSTEM_GRAPH_MCP_ADMIN=1`-equivalent configuration to this constructor option;
    /// request arguments can never enable the profile.
    #[must_use]
    pub fn with_admin_profile(mut self, enabled: bool) -> Self {
        self.admin_enabled = enabled;
        for name in ADMIN_TOOL_NAMES {
            if enabled {
                self.tool_router.enable_route(name);
            } else {
                self.tool_router.disable_route(name);
            }
        }
        self
    }

    /// Applies trusted process-level `CodeGraph` policy to exploration, impact, and scans.
    #[must_use]
    pub fn with_codegraph(mut self, enabled: bool, binary: Option<OsString>) -> Self {
        if enabled {
            self.tool_router.enable_route(EXPLORE_TOOL_NAME);
        } else {
            self.tool_router.disable_route(EXPLORE_TOOL_NAME);
        }
        self.codegraph = CodeGraphPolicy { enabled, binary };
        self
    }

    /// Enables selected public pull-request providers while retaining per-request consent.
    #[must_use]
    pub fn with_pull_request_providers(mut self, github: bool, bitbucket: bool) -> Self {
        self.github_pull_requests_enabled = github;
        self.bitbucket_pull_requests_enabled = bitbucket;
        self
    }

    /// Traces a bounded path through the current federated snapshot.
    #[tool(
        name = "trace",
        description = "Finds a bounded, explainable path between two persisted entities across repository boundaries. Use when both endpoint identifiers are known; use query first to discover identifiers. Returns a versioned ToolEnvelope containing trace segments and freshness metadata.",
        annotations(
            title = "Cross-repository path trace",
            read_only_hint = true,
            destructive_hint = false,
            idempotent_hint = true,
            open_world_hint = false
        )
    )]
    pub async fn trace(
        &self,
        Parameters(input): Parameters<TraceInput>,
    ) -> Json<ToolEnvelope<TraceReport>> {
        match trace_workspace(&self.database_path, &self.workspace, &input) {
            Ok(envelope) => Json(envelope),
            Err(error) => Json(ToolEnvelope {
                schema_version: 1,
                status: ToolStatus::Error,
                data: None,
                freshness: FreshnessSummary {
                    overall: OverallFreshness::Unknown,
                    stale_repositories: Vec::new(),
                    reasons: vec!["Trace inputs could not be validated.".to_owned()],
                },
                warnings: vec![error.to_string()],
            }),
        }
    }

    /// Searches ranked federated entities without returning source bodies.
    #[tool(
        name = "query",
        description = "Searches persisted architecture entities, contracts, and communities across the workspace without returning source bodies. Use to discover entity identifiers before trace, source_context, or impact. Returns a versioned ToolEnvelope containing ranked matches and freshness metadata.",
        annotations(
            title = "Federated entity search",
            read_only_hint = true,
            destructive_hint = false,
            idempotent_hint = true,
            open_world_hint = false
        )
    )]
    pub async fn query(
        &self,
        Parameters(input): Parameters<SearchInput>,
    ) -> Json<ToolEnvelope<SearchReport>> {
        match search_workspace(&self.database_path, &self.workspace, &input) {
            Ok(envelope) => Json(envelope),
            Err(error) => Json(error_envelope(
                "Query inputs could not be validated.",
                error,
            )),
        }
    }

    /// Explores bounded repository-local source and flow context without persisting source.
    #[tool(
        name = "explore",
        description = "Retrieves bounded, ephemeral repository-local source and call-flow context through CodeGraph. Use for symbols, callers, callees, tests, and implementation details; use query for persisted cross-repository entities. Returns a versioned ToolEnvelope containing source-bearing local context that is never persisted.",
        annotations(
            title = "Repository source exploration",
            read_only_hint = true,
            destructive_hint = false,
            idempotent_hint = true,
            open_world_hint = false
        )
    )]
    pub async fn explore(
        &self,
        Parameters(input): Parameters<ExploreInput>,
    ) -> Result<Json<ToolEnvelope<LocalContextResult>>, McpError> {
        if !self.codegraph.enabled {
            return Err(codegraph_disabled_error());
        }
        Ok(Json(
            explore_repository(
                &self.database_path,
                &self.workspace,
                &input,
                self.codegraph.binary.clone(),
            )
            .await,
        ))
    }

    /// Lists, inspects, or compares persisted deterministic communities.
    #[tool(
        name = "communities",
        description = "Lists, shows, or compares deterministic persisted communities using one explicit action. Use for inferred service boundaries, memberships, metrics, and snapshot comparisons; use query for general entity search. Returns a versioned ToolEnvelope containing a CommunityReport and freshness metadata.",
        annotations(
            title = "Community inspection",
            read_only_hint = true,
            destructive_hint = false,
            idempotent_hint = true,
            open_world_hint = false
        )
    )]
    pub async fn communities(
        &self,
        Parameters(input): Parameters<CommunitiesInput>,
    ) -> Json<ToolEnvelope<CommunityReport>> {
        if input.workspace() != self.workspace {
            return Json(error_envelope(
                "Workspace policy rejected the request.",
                format!(
                    "workspace `{}` is outside this server's configured workspace `{}`",
                    input.workspace(),
                    self.workspace
                ),
            ));
        }
        match communities_workspace(
            &self.database_path,
            &self.workspace,
            &input.application_input(),
        ) {
            Ok(envelope) => Json(envelope),
            Err(error) => Json(error_envelope(
                "Community inputs could not be validated.",
                error,
            )),
        }
    }

    /// Computes conservative impact without executing tests or repository commands.
    #[tool(
        name = "impact",
        description = "Analyzes bounded upstream or downstream effects and conservative risk for one persisted graph target across repositories. Use for a known entity; use analyze_changes for staged, worktree, or committed Git changes. Returns a versioned ToolEnvelope containing an ImpactReport, freshness metadata, and optional ephemeral CodeGraph enrichment.",
        annotations(
            title = "Cross-repository impact analysis",
            read_only_hint = true,
            destructive_hint = false,
            idempotent_hint = true,
            open_world_hint = false
        )
    )]
    pub async fn impact(
        &self,
        Parameters(input): Parameters<ImpactRequest>,
    ) -> Json<ToolEnvelope<ImpactReport>> {
        let result = if self.codegraph.enabled {
            impact_workspace_with_codegraph(
                &self.database_path,
                &self.workspace,
                &input,
                self.codegraph.binary.clone(),
            )
            .await
        } else {
            impact_workspace(&self.database_path, &self.workspace, &input)
        };
        match result {
            Ok(envelope) => Json(envelope),
            Err(error) => Json(error_envelope(
                "Impact inputs could not be validated.",
                error,
            )),
        }
    }

    /// Inspects bounded local Git changes without modifying repository state.
    #[tool(
        name = "analyze_changes",
        description = "Analyzes fingerprinted staged, worktree, or committed local Git changes and maps them to conservative graph impact. Use for repository diffs; use impact for one known persisted target. Returns a versioned ToolEnvelope containing a ChangeImpactReport and freshness metadata without modifying Git state.",
        annotations(
            title = "Local change impact analysis",
            read_only_hint = true,
            destructive_hint = false,
            idempotent_hint = true,
            open_world_hint = false
        )
    )]
    pub async fn analyze_changes(
        &self,
        Parameters(input): Parameters<ChangesInput>,
    ) -> Json<ToolEnvelope<ChangeImpactReport>> {
        match analyze_workspace_changes(
            &self.database_path,
            &self.workspace,
            &input,
            &ChangeAnalysisOptions::default(),
            None,
        )
        .await
        {
            Ok(envelope) => Json(envelope),
            Err(error) => Json(error_envelope(
                "Change inputs could not be validated.",
                error,
            )),
        }
    }

    /// Inspects one explicitly enabled public pull-request provider.
    #[tool(
        name = "analyze_pull_request",
        description = "Fetches and analyzes one consented GitHub or Bitbucket Cloud pull request from a provider enabled at server startup. Use for remote pull-request metadata and changed-file context; use analyze_changes for local Git state. Returns a versioned ToolEnvelope containing a PullRequestInspection and provider freshness metadata.",
        annotations(
            title = "Pull request analysis",
            read_only_hint = true,
            destructive_hint = false,
            idempotent_hint = true,
            open_world_hint = true
        )
    )]
    pub async fn analyze_pull_request(
        &self,
        Parameters(input): Parameters<PullRequestInput>,
    ) -> Json<ToolEnvelope<PullRequestInspection>> {
        let (enabled, token, basic_auth_username) = match input.provider {
            PullRequestProviderKind::GitHub => (
                self.github_pull_requests_enabled,
                std::env::var("GITHUB_TOKEN").ok(),
                None,
            ),
            PullRequestProviderKind::BitbucketCloud => (
                self.bitbucket_pull_requests_enabled,
                std::env::var("BITBUCKET_TOKEN").ok(),
                std::env::var("BITBUCKET_USER").ok(),
            ),
            PullRequestProviderKind::BitbucketDataCenter => (false, None, None),
        };
        match inspect_pull_request(&input, enabled, token, basic_auth_username).await {
            Ok(envelope) => Json(envelope),
            Err(error) => Json(error_envelope(
                "Pull-request inputs or provider response could not be validated.",
                error,
            )),
        }
    }

    /// Reports persisted snapshot health without reading repository source files.
    #[tool(
        name = "status",
        description = "Reports persisted graph health, freshness, and current snapshot metadata for the configured workspace. Use to verify workspace readiness before other analysis; not for entity search. Returns a versioned ToolEnvelope containing a source-free GraphStatusReport.",
        annotations(
            title = "Workspace graph status",
            read_only_hint = true,
            destructive_hint = false,
            idempotent_hint = true,
            open_world_hint = false
        )
    )]
    pub async fn status(
        &self,
        Parameters(input): Parameters<WorkspaceInput>,
    ) -> Json<ToolEnvelope<GraphStatusReport>> {
        Json(status_envelope(
            &self.database_path,
            &self.workspace,
            &input.workspace,
        ))
    }

    /// Lists a bounded page of contract entities from the immutable graph snapshot.
    #[tool(
        name = "contracts",
        description = "Lists, shows, validates, diffs, or explains persisted contracts using one explicit action. Use for API, event, database, package, and infrastructure contract analysis; use query for non-contract entities. Returns a versioned ToolEnvelope containing a ContractReport and freshness metadata.",
        annotations(
            title = "Contract inspection and validation",
            read_only_hint = true,
            destructive_hint = false,
            idempotent_hint = true,
            open_world_hint = false
        )
    )]
    pub async fn contracts(
        &self,
        Parameters(input): Parameters<ContractsInput>,
    ) -> Json<ToolEnvelope<ContractReport>> {
        Json(contracts_envelope(
            &self.database_path,
            &self.workspace,
            &input,
        ))
    }

    /// Returns bounded persisted graph and evidence metadata for one entity.
    #[tool(
        name = "source_context",
        description = "Returns bounded, source-free persisted graph context and evidence metadata for one exact entity. Use after query to explain relationships and provenance without source bodies. It does not return implementation source. Returns a versioned ToolEnvelope containing a SourceContextReport and freshness metadata.",
        annotations(
            title = "Persisted entity context",
            read_only_hint = true,
            destructive_hint = false,
            idempotent_hint = true,
            open_world_hint = false
        )
    )]
    pub async fn source_context(
        &self,
        Parameters(input): Parameters<SourceContextInput>,
    ) -> Json<ToolEnvelope<SourceContextReport>> {
        Json(source_context_envelope(
            &self.database_path,
            &self.workspace,
            &input,
        ))
    }

    /// Scans and atomically publishes the configured workspace.
    #[tool(
        name = "scan",
        description = "Scans the configured workspace and atomically publishes a new persisted graph snapshot. Use only in the enabled admin profile after repository or configuration changes; use status for a read-only health check. Returns an audited ToolEnvelope containing a ScanSummary, snapshot identity, freshness, and visible CodeGraph degradations.",
        annotations(
            title = "Publish workspace snapshot",
            read_only_hint = false,
            destructive_hint = true,
            idempotent_hint = false,
            open_world_hint = false
        )
    )]
    pub async fn scan(
        &self,
        Parameters(input): Parameters<WorkspaceInput>,
    ) -> Json<ToolEnvelope<AdminAudit<crate::ScanSummary>>> {
        Json(self.run_admin_scan(&input.workspace, "scan"))
    }

    /// Adds or removes one repository entry through the constrained manifest editor.
    #[tool(
        name = "update_workspace",
        description = "Adds or removes one repository registration in the configured workspace manifest, then validates and rescans it. Use only in the enabled admin profile for constrained workspace membership changes; use scan when membership is unchanged. Returns an audited ToolEnvelope containing the manifest mutation, backup metadata, and ScanSummary.",
        annotations(
            title = "Update workspace repositories",
            read_only_hint = false,
            destructive_hint = true,
            idempotent_hint = false,
            open_world_hint = false
        )
    )]
    pub async fn update_workspace(
        &self,
        Parameters(input): Parameters<WorkspaceUpdateInput>,
    ) -> Json<ToolEnvelope<AdminAudit<ManifestAdminReport>>> {
        Json(self.run_workspace_update(&input))
    }

    /// Appends one exact manual relationship declaration and republishes the workspace.
    #[tool(
        name = "write_manual_link",
        description = "Adds or suppresses one exact manual graph relationship in the configured manifest, then validates and rescans it. Use only in the enabled admin profile when an operator must record a reasoned relationship decision. Returns an audited ToolEnvelope containing the manifest mutation, backup metadata, and ScanSummary.",
        annotations(
            title = "Write manual relationship",
            read_only_hint = false,
            destructive_hint = true,
            idempotent_hint = false,
            open_world_hint = false
        )
    )]
    pub async fn write_manual_link(
        &self,
        Parameters(input): Parameters<ManualLinkWriteInput>,
    ) -> Json<ToolEnvelope<AdminAudit<ManifestAdminReport>>> {
        Json(self.run_manual_link_write(&input))
    }

    /// Removes bounded reusable query results for the configured workspace.
    #[tool(
        name = "clean_cache",
        description = "Removes reusable query-summary cache entries for the configured workspace without changing graph snapshots. Use only in the enabled admin profile to invalidate cached query results; not to rescan source. Returns an audited ToolEnvelope containing the number of removed entries and current snapshot identity.",
        annotations(
            title = "Clear query cache",
            read_only_hint = false,
            destructive_hint = true,
            idempotent_hint = true,
            open_world_hint = false
        )
    )]
    pub async fn clean_cache(
        &self,
        Parameters(input): Parameters<CacheCleanInput>,
    ) -> Json<ToolEnvelope<AdminAudit<CacheCleanReport>>> {
        Json(self.run_cache_clean(&input))
    }

    /// Recomputes communities by publishing a freshly analyzed workspace snapshot.
    #[tool(
        name = "recompute_communities",
        description = "Rescans the configured workspace and deterministically recomputes communities in a newly published snapshot. Use only in the enabled admin profile when community results must be refreshed; use communities for read-only inspection. Returns an audited ToolEnvelope containing the ScanSummary, snapshot identity, and freshness metadata.",
        annotations(
            title = "Recompute workspace communities",
            read_only_hint = false,
            destructive_hint = true,
            idempotent_hint = false,
            open_world_hint = false
        )
    )]
    pub async fn recompute_communities(
        &self,
        Parameters(input): Parameters<WorkspaceInput>,
    ) -> Json<ToolEnvelope<AdminAudit<crate::ScanSummary>>> {
        Json(self.run_admin_scan(&input.workspace, "community_recompute"))
    }

    fn run_admin_scan(
        &self,
        workspace: &str,
        operation: &str,
    ) -> ToolEnvelope<AdminAudit<crate::ScanSummary>> {
        if let Err(error) = self.validate_admin_workspace(workspace) {
            return error;
        }
        let manifest = match configured_manifest_path(&self.database_path, &self.workspace) {
            Ok(path) => path,
            Err(error) => {
                return error_envelope("The configured manifest path could not be loaded.", error);
            }
        };
        match scan_workspace_with_overrides(
            &manifest,
            &self.database_path,
            &ScanOverrides {
                workspace: Some(workspace.to_owned()),
                codegraph: self.codegraph.enabled,
                codegraph_binary: self.codegraph.binary.as_ref().map(PathBuf::from),
                ..ScanOverrides::default()
            },
        ) {
            Ok(summary) => {
                admin_audit_envelope(&self.database_path, &self.workspace, operation, summary)
            }
            Err(error) => error_envelope("Administrative scan failed.", error),
        }
    }

    fn run_workspace_update(
        &self,
        input: &WorkspaceUpdateInput,
    ) -> ToolEnvelope<AdminAudit<ManifestAdminReport>> {
        if let Err(error) = self.validate_admin_workspace(input.workspace()) {
            return error;
        }
        let manifest = match configured_manifest_path(&self.database_path, &self.workspace) {
            Ok(path) => path,
            Err(error) => {
                return error_envelope("The configured manifest path could not be loaded.", error);
            }
        };
        let mutation_lock = match StoreLock::acquire(&self.database_path, Duration::from_mins(5)) {
            Ok(lock) => lock,
            Err(error) => {
                return error_envelope("Workspace update lock acquisition failed.", error);
            }
        };
        let mutation = match input.repository_path() {
            Some(path) => add_repository_to_manifest(&manifest, input.alias(), path, false),
            None => remove_repository_from_manifest(&manifest, input.alias(), false),
        };
        let mutation = match mutation {
            Ok(summary) => summary,
            Err(error) => return error_envelope("Workspace manifest update failed.", error),
        };
        drop(mutation_lock);
        let scan = match scan_workspace_with_overrides(
            &manifest,
            &self.database_path,
            &ScanOverrides {
                workspace: Some(self.workspace.clone()),
                codegraph: self.codegraph.enabled,
                codegraph_binary: self.codegraph.binary.as_ref().map(PathBuf::from),
                ..ScanOverrides::default()
            },
        ) {
            Ok(summary) => summary,
            Err(error) => {
                return error_envelope(
                    "Workspace manifest changed but the follow-up scan failed; use the recorded backup to restore if needed.",
                    error,
                );
            }
        };
        let snapshot_id = scan.snapshot_id.clone();
        admin_mutation_envelope(
            &self.database_path,
            &self.workspace,
            "workspace_update",
            &snapshot_id,
            ManifestAdminReport { mutation, scan },
        )
    }

    fn run_manual_link_write(
        &self,
        input: &ManualLinkWriteInput,
    ) -> ToolEnvelope<AdminAudit<ManifestAdminReport>> {
        if let Err(error) = self.validate_admin_workspace(input.workspace()) {
            return error;
        }
        let manifest = match configured_manifest_path(&self.database_path, &self.workspace) {
            Ok(path) => path,
            Err(error) => {
                return error_envelope("The configured manifest path could not be loaded.", error);
            }
        };
        let mutation_lock = match StoreLock::acquire(&self.database_path, Duration::from_mins(5)) {
            Ok(lock) => lock,
            Err(error) => {
                return error_envelope("Manual-link write lock acquisition failed.", error);
            }
        };
        let declaration = input.declaration();
        let mutation = match add_manual_link_to_manifest(&manifest, &declaration, false) {
            Ok(summary) => summary,
            Err(error) => return error_envelope("Manual-link manifest update failed.", error),
        };
        drop(mutation_lock);
        let scan = match scan_workspace_with_overrides(
            &manifest,
            &self.database_path,
            &ScanOverrides {
                workspace: Some(self.workspace.clone()),
                codegraph: self.codegraph.enabled,
                codegraph_binary: self.codegraph.binary.as_ref().map(PathBuf::from),
                ..ScanOverrides::default()
            },
        ) {
            Ok(summary) => summary,
            Err(error) => {
                return error_envelope(
                    "Manual-link manifest changed but the follow-up scan failed; use the recorded backup to restore if needed.",
                    error,
                );
            }
        };
        let snapshot_id = scan.snapshot_id.clone();
        admin_mutation_envelope(
            &self.database_path,
            &self.workspace,
            "manual_link_write",
            &snapshot_id,
            ManifestAdminReport { mutation, scan },
        )
    }

    fn run_cache_clean(
        &self,
        input: &CacheCleanInput,
    ) -> ToolEnvelope<AdminAudit<CacheCleanReport>> {
        if let Err(error) = self.validate_admin_workspace(&input.workspace) {
            return error;
        }
        let _lock = match StoreLock::acquire(&self.database_path, Duration::from_mins(5)) {
            Ok(lock) => lock,
            Err(error) => return error_envelope("Query cache lock acquisition failed.", error),
        };
        let mut store = match SqliteStore::open(&self.database_path) {
            Ok(store) => store,
            Err(error) => return error_envelope("Query cache store could not be opened.", error),
        };
        let snapshot = match store.current_snapshot_summary(&self.workspace) {
            Ok(snapshot) => snapshot,
            Err(error) => {
                return error_envelope("Current snapshot could not be resolved.", error);
            }
        };
        let removed_entries = match store.clear_query_cache(&self.workspace) {
            Ok(count) => count,
            Err(error) => return error_envelope("Query cache cleanup failed.", error),
        };
        admin_mutation_envelope(
            &self.database_path,
            &self.workspace,
            "cache_clean",
            &snapshot.snapshot_id,
            CacheCleanReport { removed_entries },
        )
    }

    fn validate_admin_workspace<T>(&self, workspace: &str) -> Result<(), ToolEnvelope<T>> {
        if !self.admin_enabled {
            return Err(error_envelope(
                "Administrative profile is disabled.",
                "set the trusted constructor admin option before server startup",
            ));
        }
        if workspace != self.workspace {
            return Err(error_envelope(
                "Workspace policy rejected the request.",
                format!(
                    "workspace `{workspace}` is outside this server's configured `{}` policy",
                    self.workspace
                ),
            ));
        }
        Ok(())
    }
}

fn error_envelope<T>(reason: &str, error: impl std::fmt::Display) -> ToolEnvelope<T> {
    ToolEnvelope {
        schema_version: 1,
        status: ToolStatus::Error,
        data: None,
        freshness: FreshnessSummary {
            overall: OverallFreshness::Unknown,
            stale_repositories: Vec::new(),
            reasons: vec![reason.to_owned()],
        },
        warnings: vec![error.to_string()],
    }
}

fn codegraph_disabled_error() -> McpError {
    McpError::invalid_request(
        CODEGRAPH_DISABLED_MESSAGE,
        Some(serde_json::json!({ "code": CODEGRAPH_DISABLED_CODE })),
    )
}

#[allow(unknown_lints)]
#[allow(
    clippy::unused_async_trait_impl,
    reason = "rmcp requires async trait methods even when resource reads complete synchronously"
)]
#[tool_handler(router = self.tool_router)]
impl ServerHandler for CodeSystemGraphServer {
    fn get_info(&self) -> ServerInfo {
        let instructions = if self.codegraph.enabled {
            "Code System Graph exposes bounded cross-repository intelligence. Tool and resource results \
             are versioned JSON; use query for persisted entity discovery, explore for ephemeral \
             repository source, source_context for source-free evidence, impact for known targets, \
             and analyze_changes for Git diffs. Administrative tools mutate state only when enabled."
        } else {
            "Code System Graph exposes bounded cross-repository intelligence. Tool and resource results \
             are versioned JSON; use query for persisted entity discovery, source_context for source-free \
             evidence, impact for known targets, and analyze_changes for Git diffs. Repository-local \
             source access is unavailable because CodeGraph is disabled. Administrative tools mutate \
             state only when enabled."
        };
        ServerInfo::new(
            ServerCapabilities::builder()
                .enable_tools()
                .enable_resources()
                .build(),
        )
        .with_server_info(Implementation::new(
            "code_system_graph",
            env!("CARGO_PKG_VERSION"),
        ))
        .with_instructions(instructions)
    }

    async fn list_resources(
        &self,
        _request: Option<PaginatedRequestParams>,
        _context: RequestContext<RoleServer>,
    ) -> Result<ListResourcesResult, McpError> {
        let resources = resource_uris(&self.workspace)
            .into_iter()
            .map(|(uri, name, description)| {
                Resource::new(uri, name)
                    .with_description(description)
                    .with_mime_type(JSON_MIME_TYPE)
            })
            .collect();
        Ok(ListResourcesResult::with_all_items(resources).with_ttl_ms(1_000))
    }

    async fn read_resource(
        &self,
        request: ReadResourceRequestParams,
        _context: RequestContext<RoleServer>,
    ) -> Result<ReadResourceResponse, McpError> {
        let uri = request.uri;
        match read_resource(&self.database_path, &self.workspace, &uri) {
            Ok(text) => Ok(ReadResourceResult::new(vec![
                ResourceContents::text(text, uri).with_mime_type(JSON_MIME_TYPE),
            ])
            .into()),
            Err(error) => match error.kind {
                ResourceErrorKind::Invalid => Err(McpError::invalid_params(error.message, None)),
                ResourceErrorKind::Missing => {
                    Err(McpError::resource_not_found(error.message, None))
                }
                ResourceErrorKind::Internal => Err(McpError::internal_error(error.message, None)),
            },
        }
    }
}

#[cfg(test)]
mod tests {
    #[cfg(unix)]
    use std::os::unix::fs::PermissionsExt;
    use std::path::PathBuf;

    use code_system_graph_store_sqlite::SqliteStore;
    use rmcp::ServerHandler;
    #[cfg(unix)]
    use rmcp::handler::server::wrapper::Parameters;

    use super::{CodeSystemGraphServer, mcp_support};
    #[cfg(unix)]
    use crate::{CODEGRAPH_DISABLED_CODE, ExploreInput, scan_workspace};

    #[test]
    fn server_should_publish_read_only_tools() {
        let server = CodeSystemGraphServer::new(PathBuf::from("graph.db"), "commerce".to_owned())
            .with_codegraph(true, None);
        let tools = server.tool_router.list_all();
        let names = tools
            .iter()
            .map(|tool| tool.name.as_ref())
            .collect::<Vec<_>>();

        assert_eq!(
            names,
            vec![
                "analyze_changes",
                "analyze_pull_request",
                "communities",
                "contracts",
                "explore",
                "impact",
                "query",
                "source_context",
                "status",
                "trace"
            ]
        );
        assert!(tools.iter().all(|tool| {
            tool.annotations.as_ref().is_some_and(|annotations| {
                annotations.read_only_hint == Some(true)
                    && annotations.destructive_hint == Some(false)
            })
        }));
    }

    #[test]
    fn explore_should_be_hidden_until_codegraph_is_enabled() {
        let disabled = CodeSystemGraphServer::new(PathBuf::from("graph.db"), "commerce".to_owned());
        let enabled = disabled.clone().with_codegraph(true, None);

        assert!(
            disabled
                .tool_router
                .list_all()
                .iter()
                .all(|tool| tool.name != "explore")
        );
        assert!(
            enabled
                .tool_router
                .list_all()
                .iter()
                .any(|tool| tool.name == "explore")
        );
    }

    #[cfg(unix)]
    #[tokio::test]
    async fn explore_handler_should_reject_disabled_codegraph_before_execution()
    -> Result<(), Box<dyn std::error::Error>> {
        let temporary = tempfile::tempdir()?;
        let database = temporary.path().join("graph.db");
        let manifest = PathBuf::from(env!("CARGO_MANIFEST_DIR"))
            .join("../../fixtures/platform-demo/code-system-graph.yaml");
        scan_workspace(&manifest, &database)?;
        let binary = temporary.path().join("codegraph-marker");
        let marker = temporary.path().join("codegraph-invoked");
        std::fs::write(
            &binary,
            "#!/bin/sh\n: > \"$(dirname \"$0\")/codegraph-invoked\"\nexit 1\n",
        )?;
        let mut permissions = std::fs::metadata(&binary)?.permissions();
        permissions.set_mode(0o755);
        std::fs::set_permissions(&binary, permissions)?;
        let server = CodeSystemGraphServer::new(database, "commerce-platform".to_owned())
            .with_codegraph(false, Some(binary.into_os_string()));

        let result = server
            .explore(Parameters(ExploreInput {
                workspace: "commerce-platform".to_owned(),
                repository: Some("orders".to_owned()),
                query: "create_order callers".to_owned(),
                max_files: 4,
            }))
            .await;
        let Err(error) = result else {
            panic!("disabled CodeGraph policy must reject direct handler calls");
        };

        assert_eq!(
            (
                error.data.as_ref().and_then(|data| data["code"].as_str()),
                marker.exists()
            ),
            (Some(CODEGRAPH_DISABLED_CODE), false)
        );
        Ok(())
    }

    #[test]
    fn initialize_contract_should_align_instructions_with_advertised_tools() {
        let disabled = CodeSystemGraphServer::new(PathBuf::from("graph.db"), "commerce".to_owned());
        let enabled = disabled.clone().with_codegraph(true, None);
        let disabled_info = disabled.get_info();

        assert!(disabled_info.capabilities.tools.is_some());
        assert!(disabled_info.capabilities.resources.is_some());
        assert_eq!(disabled_info.server_info.name, "code_system_graph");

        for (server, codegraph_enabled) in [(&disabled, false), (&enabled, true)] {
            let explore_advertised = server
                .tool_router
                .list_all()
                .iter()
                .any(|tool| tool.name == "explore");
            let instructions = server
                .get_info()
                .instructions
                .expect("server instructions should be present");

            assert_eq!(explore_advertised, codegraph_enabled);
            assert_eq!(instructions.contains("explore"), codegraph_enabled);
        }

        let source_context = disabled
            .tool_router
            .list_all()
            .into_iter()
            .find(|tool| tool.name == "source_context")
            .expect("source_context should be advertised");
        let description = source_context
            .description
            .as_deref()
            .expect("source_context description should be present");
        assert!(!description.contains("explore"));
    }

    #[test]
    fn admin_tools_should_be_hidden_until_constructor_profile_is_enabled() {
        let hidden = CodeSystemGraphServer::new(PathBuf::from("graph.db"), "commerce".to_owned());
        assert!(
            hidden
                .tool_router
                .list_all()
                .iter()
                .all(|tool| !mcp_support::ADMIN_TOOL_NAMES.contains(&tool.name.as_ref()))
        );

        let enabled = hidden.with_admin_profile(true);
        for name in mcp_support::ADMIN_TOOL_NAMES {
            let tool = enabled
                .tool_router
                .list_all()
                .into_iter()
                .find(|tool| tool.name == name);
            assert!(tool.is_some());
            assert!(tool.is_some_and(|tool| {
                tool.annotations.as_ref().is_some_and(|annotations| {
                    annotations.read_only_hint == Some(false)
                        && annotations.destructive_hint == Some(true)
                })
            }));
        }
    }

    #[test]
    fn resource_list_should_publish_stable_workspace_policy_uris() {
        let uris = mcp_support::resource_uris("commerce")
            .into_iter()
            .map(|(uri, _, _)| uri)
            .collect::<Vec<_>>();

        assert_eq!(uris.len(), 10);
        assert!(uris.contains(&"code-system-graph://workspaces".to_owned()));
        assert!(uris.contains(&"code-system-graph://workspace/commerce/schema".to_owned()));
        assert!(uris.contains(&"code-system-graph://evidence/{id}".to_owned()));
    }

    #[test]
    fn resource_read_should_reject_wrong_workspace_before_store_access() {
        let error = mcp_support::read_resource(
            &PathBuf::from("missing.db"),
            "commerce",
            "code-system-graph://workspace/payments/status",
        );

        assert!(error.is_err());
        assert!(error.is_err_and(|error| {
            error.kind == mcp_support::ResourceErrorKind::Invalid
                && error.message.contains("outside this server's configured")
        }));
    }

    #[test]
    fn resource_read_should_return_versioned_source_free_json()
    -> Result<(), Box<dyn std::error::Error>> {
        let text = mcp_support::read_resource(
            &PathBuf::from("missing.db"),
            "commerce",
            "code-system-graph://workspaces",
        )
        .map_err(|error| std::io::Error::other(error.message))?;
        let value: serde_json::Value = serde_json::from_str(&text)?;

        assert_eq!(value["schema_version"], 1);
        assert_eq!(value["workspaces"][0]["name"], "commerce");
        assert!(!text.contains("source_body"));
        Ok(())
    }

    #[test]
    fn evidence_template_read_should_require_concrete_identifier() {
        let error = mcp_support::read_resource(
            &PathBuf::from("missing.db"),
            "commerce",
            "code-system-graph://evidence/{id}",
        );

        assert!(error.is_err_and(|error| {
            error.kind == mcp_support::ResourceErrorKind::Invalid
                && error.message.contains("concrete evidence identifier")
        }));
    }

    #[test]
    fn evidence_read_should_report_missing_metadata() -> Result<(), Box<dyn std::error::Error>> {
        let temporary = tempfile::tempdir()?;
        let database = temporary.path().join("graph.db");
        drop(SqliteStore::open(&database)?);

        let error = mcp_support::read_resource(
            &database,
            "commerce",
            "code-system-graph://evidence/evidence:missing",
        );

        assert!(error.is_err_and(|error| {
            error.kind == mcp_support::ResourceErrorKind::Missing
                && error.message.contains("no evidence snapshot")
        }));
        Ok(())
    }

    #[test]
    fn schema_resource_should_catalog_every_tool_input_and_result()
    -> Result<(), Box<dyn std::error::Error>> {
        let catalog = mcp_support::schema_catalog();
        let schemas = catalog
            .get("schemas")
            .and_then(serde_json::Value::as_object);

        assert!(schemas.is_some());
        let schemas = schemas.map_or(0, serde_json::Map::len);
        assert_eq!(schemas, 30);
        for name in [
            "explore.input",
            "explore.result",
            "update_workspace.input",
            "update_workspace.result",
            "write_manual_link.input",
            "write_manual_link.result",
            "clean_cache.input",
            "clean_cache.result",
        ] {
            assert!(catalog["schemas"].get(name).is_some(), "missing {name}");
        }
        assert_eq!(catalog["schema_version"], 1);
        assert!(catalog["application_interfaces"]["schemas"].is_array());
        assert!(serde_json::to_vec(&catalog)?.len() <= 2 * 1024 * 1024);
        Ok(())
    }

    #[test]
    fn tool_schemas_should_keep_codegraph_policy_out_of_llm_inputs() {
        let catalog = mcp_support::schema_catalog();
        let impact = catalog["schemas"]["impact.input"].to_string();
        let scan = catalog["schemas"]["scan.input"].to_string();

        assert!(!impact.contains("local_enrichment"));
        assert!(!scan.contains("codegraph"));
        assert!(!scan.contains("codegraph_binary"));
    }

    #[test]
    fn conditional_tool_inputs_should_require_action_specific_fields() {
        let contract: Result<mcp_support::ContractsInput, _> =
            serde_json::from_value(serde_json::json!({
                "action": "diff",
                "workspace": "commerce",
                "contract": "contract:a"
            }));
        let workspace_update: Result<mcp_support::WorkspaceUpdateInput, _> =
            serde_json::from_value(serde_json::json!({
                "action": "remove_repository",
                "workspace": "commerce",
                "alias": "api",
                "repository_path": "api"
            }));
        let manual_link: Result<mcp_support::ManualLinkWriteInput, _> =
            serde_json::from_value(serde_json::json!({
                "workspace": "commerce",
                "from": "a",
                "to": "b",
                "relation": "documents",
                "reason": "Operator decision"
            }));
        let communities: Result<mcp_support::CommunitiesInput, _> =
            serde_json::from_value(serde_json::json!({
                "action": "show",
                "workspace": "commerce",
                "community_id": "community:a",
                "snapshot_id": "snapshot:old"
            }));

        assert!(contract.is_err());
        assert!(workspace_update.is_err());
        assert!(manual_link.is_err());
        assert!(communities.is_err());
    }
}