ckg-storage 1.3.1

CozoDB-backed storage layer for ckg (per-repo + registry DBs).
Documentation
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use super::*;
use ckg_core::{EdgeKind, Kind, RepoId};
use cozo::DataValue;
use tempfile::tempdir;

use crate::store::lifecycle::sweep_rebuild_debris;

fn make_sym(id: &str, qname: &str) -> ckg_core::Symbol {
    ckg_core::Symbol {
        id: id.into(),
        qname: qname.into(),
        name: qname.split("::").last().unwrap_or(qname).into(),
        kind: Kind::Function,
        file: "x.rs".into(),
        line: 1,
        col: 0,
        is_public: true,
        doc: String::new(),
        hash: "h".into(),
    }
}

#[test]
fn open_and_idempotent() {
    // RocksDB takes an exclusive process-wide lock on the path, so the
    // first instance is dropped before re-opening.
    let dir = tempdir().unwrap();
    let id = RepoId::try_new("aaaaaaaaaaaaaaaaaaaaaaaa").unwrap();
    {
        let _s1 = Storage::open_unverified(id.clone(), dir.path()).unwrap();
    }
    let _s2 = Storage::open_unverified(id, dir.path()).unwrap();
}

#[test]
fn put_symbols_and_edges() {
    let dir = tempdir().unwrap();
    let id = RepoId::try_new("bbbbbbbbbbbbbbbbbbbbbbbb").unwrap();
    let st = Storage::open_unverified(id, dir.path()).unwrap();
    let syms = vec![make_sym("a", "Foo::bar"), make_sym("b", "Baz::qux")];
    st.put_symbols(&syms).unwrap();
    let edges = vec![ckg_core::Edge {
        kind: EdgeKind::Calls,
        src: "a".into(),
        dst: "b".into(),
        confidence: 1.0,
    }];
    st.put_edges(&edges).unwrap();

    let rows = st.run_mutable_unchecked("?[id] := *Symbol{id}").unwrap();
    assert_eq!(rows.rows.len(), 2);
    let edges = st.run_mutable_unchecked("?[s, d] := *Calls{src: s, dst: d}").unwrap();
    assert_eq!(edges.rows.len(), 1);
}

/// CR-I-2: a previous indexer that crashed mid-batch leaves the
/// `index_in_progress` sentinel set. The next `Storage::open_at`
/// must promote `needs_reindex=true` so the user is warned, and
/// clear the in-progress flag so a fresh run can claim it.
#[test]
fn crashed_run_promotes_needs_reindex() {
    let dir = tempdir().unwrap();
    let id = RepoId::try_new("cccccccccccccccccccccccc").unwrap();
    // First open: simulate an indexer that started but crashed
    // before mark_indexed.
    {
        let st = Storage::open_unverified(id.clone(), dir.path()).unwrap();
        st.mark_index_in_progress().unwrap();
        assert!(st.is_index_in_progress());
        // Drop without mark_indexed — simulates crash.
    }
    // Second open: recovery path must fire.
    let st = Storage::open_unverified(id, dir.path()).unwrap();
    assert!(
        st.needs_reindex(),
        "open after crashed run must set needs_reindex=true"
    );
    assert!(
        !st.is_index_in_progress(),
        "open must clear the in-progress flag (one-shot recovery)"
    );
}

/// CR-I-2: the happy path — `mark_indexed` clears BOTH sentinels.
#[test]
fn mark_indexed_clears_both_sentinels() {
    let dir = tempdir().unwrap();
    let id = RepoId::try_new("dddddddddddddddddddddddd").unwrap();
    let st = Storage::open_unverified(id, dir.path()).unwrap();
    st.mark_index_in_progress().unwrap();
    st.mark_indexed().unwrap();
    assert!(!st.needs_reindex());
    assert!(!st.is_index_in_progress());
}

/// CR-M-7: opening with a symlink-equivalent path (different
/// byte shape, same canonical resolution) auto-migrates the
/// recorded `root_path` instead of failing closed. Simulates the
/// macOS `/var ↔ /private/var` case via a real symlink.
#[test]
fn open_at_canonicalize_equal_path_auto_migrates() {
    // Set up a real-repo dir + a symlink to it.
    let outer = tempdir().unwrap();
    let real = outer.path().join("real_repo");
    std::fs::create_dir_all(&real).unwrap();
    let alias = outer.path().join("alias_repo");
    #[cfg(unix)]
    std::os::unix::fs::symlink(&real, &alias).unwrap();
    #[cfg(not(unix))]
    {
        // Skip on platforms where we can't make a symlink without admin.
        return;
    }

    let base = tempdir().unwrap();
    // Derive the RepoId from the real canonical path, as the indexer does in
    // production. Both `alias` and `real` canonicalize to the same directory,
    // so from_path of either yields the same id. Using the path-derived id
    // ensures the symlink-swap guard (RepoId::from_path(canonical) ==
    // repo_id) passes for a legitimate alias and correctly rejects only a
    // swap to a *different* real directory.
    let id = RepoId::from_path(&real).expect("RepoId::from_path on real_repo");

    // First open: stamp the alias path.
    {
        let _ = Storage::open_at(id.clone(), &alias, base.path()).unwrap();
    }
    // Second open: pass the canonical path (real). Pre-M-7 this
    // failed with "RepoId collision detected"; post-M-7 it auto-
    // migrates and succeeds.
    let _ = Storage::open_at(id, &real, base.path())
        .expect("symlink-equivalent path must auto-migrate, not collide");
}

/// CR-review-#5: negative path — stored root_path no longer exists
/// on disk (canonicalize fails), caller's path differs byte-wise.
/// Auto-migrate must NOT silently accept; the original collision-
/// detection error must fire.
#[test]
fn open_at_canonicalize_fails_falls_through_to_collision() {
    let outer = tempdir().unwrap();
    let real = outer.path().join("real_repo");
    std::fs::create_dir_all(&real).unwrap();

    let base = tempdir().unwrap();
    let id = RepoId::try_new("ffffffffffffffffffffffff").unwrap();

    // First open: stamp `real_repo`.
    {
        let _ = Storage::open_at(id.clone(), &real, base.path()).unwrap();
    }
    // Delete the real path so canonicalize on the stored value now fails.
    std::fs::remove_dir_all(&real).unwrap();

    // Re-open with a different path that DOES exist — but canonicalize
    // of the stored value fails, so paths_canonicalize_equal returns
    // false, and the collision-detection error must surface.
    let other = outer.path().join("other_repo");
    std::fs::create_dir_all(&other).unwrap();
    match Storage::open_at(id, &other, base.path()) {
        Ok(_) => panic!("must fail closed when stored path can't canonicalize"),
        Err(e) => {
            let msg = e.to_string();
            assert!(
                msg.contains("RepoId collision"),
                "expected collision error, got: {msg}"
            );
        }
    }
}

/// CR-review-#5: negative path — two distinct repos that happen to
/// hash to the same RepoId must continue to fail closed even with
/// auto-migrate enabled. Both paths exist but canonicalize to
/// different absolutes.
#[test]
fn open_at_distinct_repos_still_collide() {
    let outer = tempdir().unwrap();
    let repo_a = outer.path().join("repo_a");
    let repo_b = outer.path().join("repo_b");
    std::fs::create_dir_all(&repo_a).unwrap();
    std::fs::create_dir_all(&repo_b).unwrap();

    let base = tempdir().unwrap();
    let id = RepoId::try_new("0123456789abcdef01234567").unwrap();

    {
        let _ = Storage::open_at(id.clone(), &repo_a, base.path()).unwrap();
    }
    match Storage::open_at(id, &repo_b, base.path()) {
        Ok(_) => panic!("two distinct repos must surface collision error"),
        Err(e) => {
            let msg = e.to_string();
            assert!(
                msg.contains("RepoId collision"),
                "expected collision error, got: {msg}"
            );
        }
    }
}

#[test]
fn registry_open() {
    let dir = tempdir().unwrap();
    let _r = RegistryStorage::open(dir.path()).unwrap();
}

/// I2: opening the same RepoId with a DIFFERENT canonical root_path
/// must refuse — that's exactly the collision case where two repos
/// hashed to the same 64-bit RepoId would otherwise silently merge.
#[test]
fn open_at_refuses_root_path_mismatch() {
    let dir = tempdir().unwrap();
    let id = RepoId::try_new("cccccccccccccccccccccccc").unwrap();
    let root_a = std::path::Path::new("/tmp/ckg-test-repo-A");
    let root_b = std::path::Path::new("/tmp/ckg-test-repo-B");
    // First open stamps root_a.
    {
        let _s = Storage::open_at(id.clone(), root_a, dir.path()).unwrap();
    }
    // Re-opening with root_a succeeds.
    {
        let _s = Storage::open_at(id.clone(), root_a, dir.path()).unwrap();
    }
    // Re-opening with root_b refuses (collision detected).
    let res = Storage::open_at(id.clone(), root_b, dir.path());
    match res {
        Ok(_) => panic!("expected collision error, got Ok"),
        Err(e) => assert!(
            e.to_string().contains("RepoId collision detected"),
            "expected collision error; got {e}"
        ),
    }
}

/// I2: backward-compat — `Storage::open_unverified` (no root) does NOT
/// verify, so existing tests / ad-hoc CLI usage stays unbroken.
#[test]
fn open_without_root_skips_verification() {
    let dir = tempdir().unwrap();
    let id = RepoId::try_new("dddddddddddddddddddddddd").unwrap();
    // Stamp via open_at:
    {
        let _s = Storage::open_at(
            id.clone(),
            std::path::Path::new("/tmp/some/root"),
            dir.path(),
        )
        .unwrap();
    }
    // Open without root — must succeed even though Meta has a
    // mismatched-style root recorded; backward-compat path doesn't
    // perform the check.
    let _s = Storage::open_unverified(id, dir.path()).unwrap();
}

/// R1 (re-fix): `sweep_rebuild_debris` must NOT delete `<path>.old`
/// when `<path>` contains partial RocksDB debris (e.g. a stray LOG
/// file with no `CURRENT`). The old gate (`read_dir empty`) was
/// satisfied by any single file, destroying the recovery dir from
/// a prior C3 hard-error path.
#[test]
fn sweep_preserves_old_when_path_lacks_current_file() {
    let dir = tempdir().unwrap();
    let workspace = dir
        .path()
        .join("workspace_folders")
        .join("recovery_test_id");
    std::fs::create_dir_all(&workspace).unwrap();
    // Simulate post-crash state: <path> has a stray LOG file (RocksDB
    // debris) but NO CURRENT — the marker of a healthy DB.
    std::fs::write(workspace.join("LOG"), b"stale rocksdb log").unwrap();
    // Recovery dir from a prior failed swap.
    let old_path = workspace.with_extension("old");
    std::fs::create_dir_all(&old_path).unwrap();
    // The healthy old DB has CURRENT.
    std::fs::write(old_path.join("CURRENT"), b"MANIFEST-000001\n").unwrap();
    std::fs::write(old_path.join("MANIFEST-000001"), b"").unwrap();

    sweep_rebuild_debris(&workspace);

    assert!(
        old_path.exists(),
        "sweep destroyed the recovery dir at {} despite <path> being unhealthy",
        old_path.display()
    );
    assert!(
        old_path.join("CURRENT").is_file(),
        "recovery dir contents lost"
    );
}

/// R1 inverse: when `<path>` IS a healthy RocksDB (has CURRENT),
/// `<path>.old` is correctly swept (old behavior preserved).
#[test]
fn sweep_removes_old_when_path_has_current() {
    let dir = tempdir().unwrap();
    let workspace = dir.path().join("workspace_folders").join("healthy_path");
    std::fs::create_dir_all(&workspace).unwrap();
    // A healthy RocksDB directory requires both CURRENT and at least one
    // MANIFEST-* file. CURRENT alone is insufficient (could be a partial init).
    std::fs::write(workspace.join("CURRENT"), b"MANIFEST-000001\n").unwrap();
    std::fs::write(workspace.join("MANIFEST-000001"), b"").unwrap();
    let old_path = workspace.with_extension("old");
    std::fs::create_dir_all(&old_path).unwrap();
    std::fs::write(old_path.join("LOG"), b"stale").unwrap();

    sweep_rebuild_debris(&workspace);

    assert!(
        !old_path.exists(),
        "healthy <path> should have triggered .old sweep"
    );
}

/// NI1: opening with `open_at` after a Meta read-failure must NOT
/// silently stamp the caller's path. We verify the stamp-then-verify
/// cycle across the NoRow / Recorded transitions.
#[test]
fn open_at_stamp_then_verify_round_trip() {
    let dir = tempdir().unwrap();
    let id = RepoId::try_new("01101011001011001011001a").unwrap();
    let root = std::path::Path::new("/tmp/ckg-ni1-test");
    // Open #1: NoRow → stamp.
    {
        let _ = Storage::open_at(id.clone(), root, dir.path()).unwrap();
    }
    // Open #2: Recorded(matches) → ok.
    {
        let _ = Storage::open_at(id.clone(), root, dir.path()).unwrap();
    }
    // Open #3: Recorded(mismatch) → refuse.
    let mismatch_root = std::path::Path::new("/tmp/ckg-ni1-other");
    let res = Storage::open_at(id, mismatch_root, dir.path());
    match res {
        Ok(_) => panic!("should have refused mismatched root"),
        Err(e) => {
            let m = e.to_string();
            assert!(
                m.contains("RepoId collision detected"),
                "expected collision error, got: {m}"
            );
        }
    }
}

/// Fix-1b: index GC must reap symbols whose source files no longer
/// appear in the live-file set, and clean up their incident edges.
#[test]
fn gc_symbols_not_in_drops_phantom_symbols_and_edges() {
    let dir = tempdir().unwrap();
    let id = RepoId::try_new("0a1b2c3d4e5f6a7b8c9d0e1f").unwrap();
    let st = Storage::open_unverified(id, dir.path()).unwrap();
    st.put_symbols(&[
        make_sym("live_id", "Mod::live_fn"),
        ckg_core::Symbol {
            id: "phantom_id".into(),
            qname: "Mod::phantom_fn".into(),
            name: "phantom_fn".into(),
            kind: Kind::Function,
            file: "deleted.rs".into(),
            line: 1,
            col: 0,
            is_public: true,
            doc: String::new(),
            hash: "hp".into(),
        },
    ])
    .unwrap();
    st.put_edges(&[
        ckg_core::Edge {
            kind: EdgeKind::Calls,
            src: "live_id".into(),
            dst: "phantom_id".into(),
            confidence: 1.0,
        },
        ckg_core::Edge {
            kind: EdgeKind::Calls,
            src: "phantom_id".into(),
            dst: "live_id".into(),
            confidence: 1.0,
        },
    ])
    .unwrap();
    let mut live = std::collections::HashSet::new();
    live.insert("x.rs".to_string()); // file of make_sym(live_id)
    let deleted = st.gc_symbols_not_in(&live).unwrap();
    assert_eq!(deleted, 1, "exactly one phantom symbol must be reaped");
    let surviving_syms = st
        .run_mutable_unchecked("?[id] := *Symbol{id}")
        .unwrap()
        .rows
        .len();
    assert_eq!(surviving_syms, 1, "only the live symbol must remain");
    let surviving_edges = st
        .run_mutable_unchecked("?[s, d] := *Calls{src: s, dst: d}")
        .unwrap()
        .rows
        .len();
    assert_eq!(
        surviving_edges, 0,
        "both edges touching phantom_id must be reaped"
    );
}

/// Fix-1b: GC must be a no-op when every existing symbol's file is in
/// the live set (the common steady-state case).
#[test]
fn gc_symbols_not_in_is_noop_when_all_live() {
    let dir = tempdir().unwrap();
    let id = RepoId::try_new("0b1c2d3e4f506172839405a6").unwrap();
    let st = Storage::open_unverified(id, dir.path()).unwrap();
    st.put_symbols(&[make_sym("a", "Foo::bar")]).unwrap();
    let mut live = std::collections::HashSet::new();
    live.insert("x.rs".to_string());
    let deleted = st.gc_symbols_not_in(&live).unwrap();
    assert_eq!(deleted, 0);
    let surviving = st
        .run_mutable_unchecked("?[id] := *Symbol{id}")
        .unwrap()
        .rows
        .len();
    assert_eq!(surviving, 1);
}

/// I8: `resolve_cross_file_calls` must not regress correctness. A
/// bare-name dst should still rewrite to the unique Symbol id even
/// after the narrowed-load refactor.
#[test]
fn resolve_cross_file_calls_rewrites_unique_bare_name() {
    let dir = tempdir().unwrap();
    let id = RepoId::try_new("eeeeeeeeeeeeeeeeeeeeeeee").unwrap();
    let st = Storage::open_unverified(id, dir.path()).unwrap();
    // Two symbols with distinct names; one Calls edge with a bare
    // dst that exactly matches the second symbol's name.
    st.put_symbols(&[
        ckg_core::Symbol {
            id: "src_id".into(),
            qname: "Caller::go".into(),
            name: "go".into(),
            kind: Kind::Function,
            file: "a.rs".into(),
            line: 1,
            col: 0,
            is_public: true,
            doc: String::new(),
            hash: "h1".into(),
        },
        ckg_core::Symbol {
            id: "tgt_id".into(),
            qname: "Target::run".into(),
            name: "uniq_target".into(),
            kind: Kind::Function,
            file: "b.rs".into(),
            line: 1,
            col: 0,
            is_public: true,
            doc: String::new(),
            hash: "h2".into(),
        },
    ])
    .unwrap();
    st.put_edges(&[ckg_core::Edge {
        kind: EdgeKind::Calls,
        src: "src_id".into(),
        dst: "uniq_target".into(), // bare name, not yet a Symbol.id
        confidence: 0.5,
    }])
    .unwrap();
    let rewritten = st.resolve_cross_file_calls().unwrap();
    assert_eq!(rewritten, 1, "expected exactly one rewrite");
    let rows = st.run_mutable_unchecked("?[s, d] := *Calls{src: s, dst: d}").unwrap();
    let dst = rows
        .rows
        .first()
        .and_then(|r| r.get(1))
        .and_then(|v| match v {
            DataValue::Str(s) => Some(s.to_string()),
            _ => None,
        })
        .unwrap();
    assert_eq!(dst, "tgt_id", "dst should rewrite to target id");
}