ciri-toolkit 0.2.2

High-performance circRNA detection and isoform reconstruction toolkit
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.85"
name = "ciri-toolkit"
version = "0.2.2"
build = false
include = [
    "/Cargo.lock",
    "/Cargo.toml",
    "/README.md",
    "/src/**",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
default-run = "ciri"
description = "High-performance circRNA detection and isoform reconstruction toolkit"
homepage = "https://bioinfo.ioz.ac.cn/git/zhangjy/CIRI-toolkit"
readme = "README.md"
keywords = [
    "circrna",
    "rna-seq",
    "bioinformatics",
    "ciri",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "GPL-2.0-or-later"
repository = "https://bioinfo.ioz.ac.cn/git/zhangjy/CIRI-toolkit"

[lib]
name = "ciri_toolkit"
path = "src/lib.rs"

[[bin]]
name = "ciri"
path = "src/bin/ciri.rs"

[[bin]]
name = "ciri-simulator"
path = "src/bin/ciri-simulator.rs"

[[bin]]
name = "ciri-merge"
path = "src/bin/ciri-merge.rs"

[[bin]]
name = "ciri-assemble"
path = "src/bin/ciri-assemble.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.chrono]
version = "0.4.44"

[dependencies.clap]
version = "4.4"
features = ["derive"]

[dependencies.dashmap]
version = "5.5"

[dependencies.indicatif]
version = "0.18.4"

[dependencies.itertools]
version = "0.12"

[dependencies.libc]
version = "0.2.183"

[dependencies.memchr]
version = "2.8.0"

[dependencies.memmap2]
version = "0.9.10"

[dependencies.needletail]
version = "0.5"

[dependencies.noodles]
version = "0.85"
features = [
    "sam",
    "bam",
    "gtf",
    "fasta",
]

[dependencies.rayon]
version = "1.8"

[dependencies.regex]
version = "1.10"

[dev-dependencies.pretty_assertions]
version = "1.4"

[dev-dependencies.tempfile]
version = "3.8"