#![forbid(unsafe_code)]
pub mod abbreviations;
pub mod activity_cliff;
pub mod admet;
pub mod alerts;
pub mod atropisomer;
pub mod brics;
pub mod cache;
pub mod cip;
pub mod condensed;
pub mod descriptors;
pub mod diversity;
pub mod esol;
pub mod estate;
pub mod mlp;
pub mod formula;
pub mod gasteiger;
pub mod hash;
pub mod hydrogen;
pub mod ifg;
pub mod isotope_distribution;
pub mod iupac_stereo;
pub mod logd;
pub mod mmff94_bci;
pub mod mmp;
pub mod named_groups;
pub mod pka;
pub mod qed;
pub mod recap;
pub mod rgroup;
pub mod sa_score;
pub mod scaffold;
pub mod standardize;
pub mod stereo;
pub mod tautomer;
pub mod topo_descriptors;
pub mod vsa;
pub mod workflow;
pub mod xlogp3;
pub use cip::{CipAssignment, assign_cip, tetrahedral_stereo_neighbors};
pub use descriptors::{
aromatic_ring_count, autocorr_2d, balaban_j, calc_mol_formula, cns_mpo_score, egan_passes,
exact_mass, formal_charge_per_atom, formal_charge_sum, fraction_rotatable_bonds, fsp3,
ghose_passes, hall_kier_alpha, hba_count, hba_count_lipinski, hbd_count, heavy_atom_count,
hybridization_per_atom, implicit_hcount_per_atom, ipc, lead_like_passes, lipinski_passes,
logp_crippen, logp_crippen_per_atom, mcf_passes, mmff94_charges, molar_refractivity,
molecular_weight, mqn, mr_per_atom, num_aliphatic_heterocycles, num_aliphatic_rings,
num_amide_bonds, num_aromatic_heterocycles, num_bridgehead_atoms, num_bromines, num_carbons,
num_chlorines, num_ester_bonds, num_fluorines, num_heteroatoms, num_hydrogens, num_iodines,
num_nitrogens, num_oxygens, num_phosphorus, num_saturated_heterocycles, num_saturated_rings,
num_spiro_atoms, num_stereocenters, num_sulfurs, num_unspecified_stereocenters,
pfizer_3_75_passes, reos_passes, ring_count, ring_system_count, ro3_passes,
rotatable_bond_count, tpsa, tpsa_per_atom, usrcat, veber_passes,
};
pub use iupac_stereo::iupac_name_stereo;
pub use abbreviations::{abbreviations, expand_abbreviation};
pub use activity_cliff::{ActivityCliff, activity_cliffs};
pub use admet::{
AdmetProfile, BoiledEggProfile, ClearanceClass, admet_profile, ames_alerts, ames_passes,
ames_risk_score, bbb_passes, bbb_score, boiled_egg, caco2_permeability, clearance_class,
clearance_score, cyp3a4_inhibition_risk, herg_risk_score, ppb_percent,
};
pub use alerts::{brenk_matches, brenk_passes, pains_matches, pains_passes};
pub use atropisomer::{AtropisomerType, assign_atropisomer_chirality, detect_atropisomers};
pub use brics::{BricsConfig, brics_bonds, brics_fragments, brics_fragments_with_config};
pub use cache::{DescriptorCache, DescriptorEntry};
pub use condensed::{CondensedError, parse_condensed};
pub use diversity::{butina_cluster, maxmin_picks};
pub use esol::esol_solubility;
pub use mlp::{MLP_SOLUBILITY_TRAINED, mlp_solubility};
pub use estate::{estate_indices, max_estate, min_estate, sum_estate};
pub use formula::{FormulaParseError, parse_formula};
pub use gasteiger::gasteiger_charges;
pub use hash::{are_identical, mol_hash};
pub use hydrogen::{add_hydrogens, remove_hydrogens};
pub use ifg::{FunctionalGroup, identify_functional_groups};
pub use isotope_distribution::isotope_distribution;
pub use logd::{logd_profile, logd_simple};
pub use mmff94_bci::{MmffType, assign_mmff94_type, mmff94_charges_bci, mmff94_charges_typed};
pub use mmp::{MmpPair, find_mmp};
pub use named_groups::{NamedGroup, detect_named_functional_groups};
pub use pka::{PkaSite, PkaSiteType, pka_acid, pka_base, predict_pka};
pub use qed::qed;
pub use recap::{recap_breakable_bond_count, recap_fragment};
pub use rgroup::{RGroupError, RGroupResult, rgroup_decompose};
pub use sa_score::sa_score;
pub use scaffold::{
ScaffoldNetwork, generic_murcko_scaffold, murcko_scaffold, scaffold_network,
scaffold_network_with_counts, schuffenhauer_parents,
};
pub use standardize::{
MoleculeSnapshot, PipelineStatus, StandardizationPipeline, StandardizationReport,
StandardizationStep, StandardizationStepReport, StandardizationWarning, StandardizeOptions,
ZwitterionHandling, has_zwitterion, largest_fragment, neutralize_charges, normalize_groups,
normalize_zwitterion, prefer_organic, reionize, remove_isotopes, remove_stereo, standardize,
uncharge,
};
pub use stereo::{assign_complete_stereochemistry, enumerate_stereoisomers, invert_stereocenter};
pub use tautomer::{
TautomerConfig, canonical_tautomer, canonical_tautomer_with_config, enumerate_tautomers,
enumerate_tautomers_with_config,
};
pub use topo_descriptors::{
bertz_ct, chi0, chi0v, chi1, chi1v, chi2, chi2v, chi3, chi3v, chi4, chi4v, kappa1, kappa2,
kappa3, labute_asa, labute_asa_per_atom, randic_index, topological_distance_matrix,
wiener_index, zagreb_index_m1, zagreb_index_m2,
};
pub use vsa::{estate_vsa, peoe_vsa, slogp_vsa, smr_vsa};
pub use workflow::{
CompareOptions, DescriptorDelta, DescriptorSummary, FilterSummary, FunctionalGroupSummary,
MoleculeComparison, MoleculeReport, NamedGroupSummary, PairwiseComparison, ReportOptions,
ScreenOptions, ScreeningRecord, ScreeningReport, SimilaritySummary, WorkflowError,
WorkflowLimits, compare_molecules, compare_molecules_with_options, molecule_report,
molecule_report_with_options, screen_smiles, screen_smiles_with_options,
};
pub use xlogp3::{xlogp3, xlogp3_per_atom};