chelae 0.1.0

A toolkit for trimming and filtering FASTQ reads.
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "chelae"
version = "0.1.0"
authors = [
    "Nathan Roach <nathan@fulcrumgenomics.com>",
    "Tim Fennell <tim@fulcrumgenomics.com>",
    "Nils Homer <nils@fulcrumgenomics.com>",
]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A toolkit for trimming and filtering FASTQ reads."
homepage = "https://github.com/fulcrumgenomics/chelae"
readme = "README.md"
keywords = [
    "bioinformatics",
    "genomics",
    "fastq",
    "trimming",
    "ngs",
]
categories = [
    "science::bioinformatics",
    "command-line-utilities",
]
license = "MIT"
repository = "https://github.com/fulcrumgenomics/chelae"

[package.metadata.multivers.x86_64]
cpus = [
    "x86-64",
    "x86-64-v2",
    "x86-64-v4",
]

[lib]
name = "chelae_lib"
path = "src/lib/mod.rs"

[[bin]]
name = "chelae"
path = "src/bin/main.rs"

[dependencies.anyhow]
version = "1.0.102"

[dependencies.bgzf]
version = "0.3"

[dependencies.bytemuck]
version = "1.25.0"

[dependencies.clap]
version = "4.6.0"
features = ["derive"]

[dependencies.crossbeam-channel]
version = "0.5"

[dependencies.enum_dispatch]
version = "0.3.13"

[dependencies.env_logger]
version = "0.11.10"

[dependencies.fgoxide]
version = "0.6.0"

[dependencies.flate2]
version = "1.1.9"
features = ["zlib-rs"]

[dependencies.log]
version = "0.4.29"

[dependencies.mimalloc]
version = "0.1.48"
default-features = false

[dependencies.oneshot]
version = "0.2"
features = ["std"]

[dependencies.read-structure]
version = "0.3.0"

[dependencies.seq_io]
version = "0.3.1"

[dependencies.serde]
version = "1.0.228"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.wide]
version = "1.3"

[dependencies.zlib-rs]
version = "0.6"
features = [
    "std",
    "rust-allocator",
    "avx512",
]
default-features = false

[dev-dependencies.rstest]
version = "0.26.1"

[dev-dependencies.tempfile]
version = "3.27.0"

[profile.bench-prof]
lto = "thin"
debug = 1
inherits = "release"
strip = false

[profile.dist]
incremental = false
inherits = "release"

[profile.release]
lto = "fat"
codegen-units = 1