chaintools 0.0.8

work with .chain files in Rust

Coverage
40%
58 out of 145 items documented4 out of 67 items with examples
Size
Source code size: 2.01 MB This is the summed size of all the files inside the crates.io package for this release.
Documentation size: 1.64 MB This is the summed size of all files generated by rustdoc for all configured targets
Ø build duration
this release: 3s Average build duration of successful builds.
all releases: 21s Average build duration of successful builds in releases after 2024-10-23.
Links
Homepage
alejandrogzi/chaintools
0 1 0
crates.io
Dependencies
Versions
Owners

Installation

cargo install --all-features chaintools

docker pull ghcr.io/alejandrogzi/chaintools:latest

conda install -c bioconda chaintools

Add this to your Cargo.toml:

[dependencies]
chaintools = { version = "0.0.8", features = ["mmap", "gzip", "parallel"] }

Command	Mean [s]	Min [s]	Max [s]	Relative
`chaintools filter`	7.205 ± 0.102	7.087	7.266	1.00
`UCSC chainFilter`	11.778 ± 0.043	11.729	11.812	1.63 ± 0.02

`chaintools sort`	12.434 ± 0.165	12.298	12.617	1.00
`UCSC chainSort`	18.279 ± 0.025	18.254	18.303	1.47 ± 0.02

`chaintools merge`	11.995 ± 0.045	11.943	12.024	1.00
`UCSC chainMergeSort`	17.616 ± 0.071	17.557	17.696	1.47 ± 0.01

*ran using hyperfine 1.18.0 on an AMD Ryzen 7 5700X with 128 GB of RAM and 16 cores with a 262 MB chain.gz file as input