cf1-rs 0.3.1

Fast construction of compacted reference de Bruijn graphs
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "cf1-rs"
version = "0.3.1"
authors = ["Rob Patro <rob@cs.umd.edu>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Fast construction of compacted reference de Bruijn graphs"
homepage = "https://github.com/COMBINE-lab/cf1-rs"
readme = "README.md"
keywords = [
    "bioinformatics",
    "de-bruijn-graph",
    "genomics",
    "k-mer",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "BSD-3-Clause"
repository = "https://github.com/COMBINE-lab/cf1-rs"

[lib]
name = "cf1_rs"
path = "src/lib.rs"

[[bin]]
name = "cf1-rs"
path = "src/main.rs"

[[bin]]
name = "phase_bench"
path = "src/bin/phase_bench.rs"

[dependencies.ahash]
version = "0.8.12"

[dependencies.anyhow]
version = "1.0.102"

[dependencies.bon]
version = "3.9.0"

[dependencies.clap]
version = "4.5.60"
features = ["derive"]

[dependencies.crossbeam-channel]
version = "0.5.15"

[dependencies.itoa]
version = "1.0.17"

[dependencies.libc]
version = "0.2"

[dependencies.needletail]
version = "0.6"

[dependencies.nohash-hasher]
version = "0.2"

[dependencies.ph]
version = "0.11"
features = ["wyhash"]
default-features = false

[dependencies.rayon]
version = "1.11"

[dependencies.serde]
version = "1.0.228"
features = ["derive"]

[dependencies.serde_json]
version = "1.0.149"

[dependencies.simd-minimizers]
version = "2.3"

[dependencies.tracing]
version = "0.1.44"

[dependencies.tracing-subscriber]
version = "0.3"
features = ["env-filter"]

[dependencies.voracious_radix_sort]
version = "1"

[dependencies.xxhash-rust]
version = "0.8.15"
features = ["xxh3"]