Struct census_proteomics::Protein

pub struct Protein {
    pub accession: String,
    pub description: String,
    pub spectral_count: u16,
    pub sequence_count: u16,
    pub sequence_coverage: f32,
    pub molecular_weight: u32,
    pub peptides: Vec<Peptide>,
    pub channels: u8,
}

Protein-level TMT quantification data, as well as additional metadata about the protein that is output in the Census file

Fields

accession: String

Uniprot accession identifier

description: String

Long-form description

spectral_count: u16

Number of spectral counts

sequence_count: u16

Number of unique sequence counts

sequence_coverage: f32

Sequence coverage

molecular_weight: u32

Molecular weight

peptides: Vec<Peptide>

Raw signal intensity channels

channels: u8

Implementations

impl Protein

pub fn total(&self) -> Vec<u32>

Return the summed intensities for all peptides

pub fn ratios(&self) -> Vec<f64>

Return a vector of normalized ratios, where the signal intensity for each channel is divided by the sum of all channels

Trait Implementations

impl Clone for Protein

pub fn clone(&self) -> Protein

Returns a copy of the value.

pub fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Default for Protein

pub fn default() -> Protein

Returns the "default value" for a type.

impl PartialEq<Protein> for Protein

pub fn eq(&self, other: &Protein) -> bool

This method tests for self and other values to be equal, and is used by ==.

pub fn ne(&self, other: &Protein) -> bool

This method tests for !=.

impl PartialOrd<Protein> for Protein

pub fn partial_cmp(&self, other: &Protein) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

pub fn lt(&self, other: &Protein) -> bool

This method tests less than (for self and other) and is used by the < operator.

pub fn le(&self, other: &Protein) -> bool

This method tests less than or equal to (for self and other) and is used by the <= operator.

pub fn gt(&self, other: &Protein) -> bool

This method tests greater than (for self and other) and is used by the > operator.

pub fn ge(&self, other: &Protein) -> bool

This method tests greater than or equal to (for self and other) and is used by the >= operator.

impl StructuralPartialEq for Protein