# canon apply
Apply a manifest to copy/move files. Copied files are automatically registered in the database with the same content hash, so they're immediately recognized as archived (no separate `scan` needed).
```bash
# Preview what would happen (fast - skips source existence checks)
canon apply manifest.toml --dry-run
# Copy files (default mode, preserves mtime/permissions on Unix)
canon apply manifest.toml
# Show per-file progress during transfer
canon apply manifest.toml --verbose
# Resume a previously interrupted apply
canon apply manifest.toml --resume
# Rename files instead of copying (Unix only, fails on cross-device)
canon apply manifest.toml --rename
# Move files: rename if same device, copy+delete if cross-device
canon apply manifest.toml --move --yes
# Only apply sources from specific roots
canon apply manifest.toml --root id:1 --root id:2
canon apply manifest.toml --root path:/path/to/source
# Allow duplicates across archives (but not within destination)
canon apply manifest.toml --allow-cross-archive-duplicates
```
**Transfer modes:**
| (default) | Copy + preserve mtime/permissions (Unix) |
| `--rename` | Atomic rename; fails if cross-device (Unix only) |
| `--move` | Try rename; fallback to copy+delete on cross-device (Unix only, requires `--yes`) |
All modes use noclobber semantics: if a destination file exists, apply aborts with an error.
**Resume mode (`--resume`):**
Use `--resume` to continue a previously interrupted apply. This is useful when:
- Apply was interrupted (Ctrl+C, system crash, disk full)
- Some files failed to transfer due to errors
Resume mode classifies each destination into one of:
- **Already archived** - Registered in database, skipped
- **Resumed** - File exists on disk but not in database, skipped (needs `scan` to register)
- **To transfer** - Not in database, not on disk, will be copied
```bash
# Resume an interrupted apply
canon apply manifest.toml --resume
# Preview what --resume would do
canon apply manifest.toml --resume --dry-run
```
If `--resume` reports "resumed" files, run `canon scan` on the affected paths to register them:
```bash
# Scan only the destination directory that was being written to
canon scan /path/to/archive/2024
```
If `--resume` detects files with size mismatches (partial copies from interrupted transfers), it will error and ask you to delete those files before continuing.
**Integrity validation:**
During transfer, Canon validates each source file's partial hash (first 8KB + last 8KB) to detect file corruption or modification since the manifest was generated. If validation fails, the transfer is aborted.
**Root filtering:**
Use `--root` to apply only a subset of sources from the manifest. Useful for staged application when sources are on different drives.
- `--root id:N` - Filter by root ID (shown in manifest as `root_id`)
- `--root path:/path` - Filter by root path (must match exactly)
**Pre-flight checks** (mandatory):
1. **Destination collisions** - If multiple sources would map to the same destination path (e.g., using `{filename}` when sources have duplicate names), apply aborts with an error showing which files conflict.
2. **Destination path conflicts** - In regular mode (without `--resume`), checks if any destination paths are already occupied — either registered in the database or existing on disk. If conflicts are found, apply suggests using `--resume` to skip already-copied files.
3. **Stale destination records** - If the database shows files as present in the archive but they're missing from disk, apply aborts. Run `canon scan <archive>` to update the database before retrying.
4. **Archive conflicts** - Checks if files already exist in the destination archive or other archives.
5. **Excluded sources** - Blocks if any sources in the manifest are marked as excluded.
Edit the manifest's `[output]` section to customize the destination:
```toml
[output]
```
Pattern variables use fact keys with optional modifiers (see [Pattern Expressions](../../reference/expr.md) for the full syntax):
- `{filename}`, `{stem}`, `{ext}` - Filename aliases
- `{hash}`, `{hash_short}` - Content hash aliases
- `{source.mtime|year}`, `{source.mtime|month}` - File modification date
- `{content.DateTimeOriginal|year}` - EXIF date with modifier
- `{content.Make}`, `{content.Model}` - Any fact key
**Recovering from interrupted apply:**
If apply is interrupted or encounters errors:
1. Fix any reported errors (permissions, disk space, etc.)
2. Delete any partial files in the archive (files with wrong sizes from interrupted copies)
3. Re-run with `--resume`:
```bash
canon apply manifest.toml --resume
```
The `--resume` flag skips files that already exist and transfers only the remaining files. It will detect and report partial files that need deletion.
If `--resume` reports "resumed" files, scan the destination to register them:
```bash
canon scan /path/to/archive/destination-folder
```
If source files changed during apply, refresh the manifest first:
```bash
canon scan <source-paths>
canon cluster refresh manifest.toml
canon apply manifest.toml
```