bsxplorer2 0.2.3

[dependencies.anyhow]
version = "1.0.91"

[dependencies.arcstr]
features = ["serde"]
version = "1.2.0"

[dependencies.bincode]
features = ["serde"]
version = "=2.0.0-rc.3"

[dependencies.bio]
version = "2.0.3"

[dependencies.bzip2]
optional = true
version = "0.5.2"

[dependencies.crossbeam]
version = "0.8.4"

[dependencies.csv]
version = "1.3.1"

[dependencies.ctor]
version = "0.4.2"

[dependencies.dbscan]
optional = true
version = "0.3.1"

[dependencies.flate2]
optional = true
version = "1.1.1"

[dependencies.hashbrown]
features = ["serde"]
version = "0.15.3"

[dependencies.id_tree]
version = "1.8.0"

[dependencies.indexmap]
version = "2.9.0"

[dependencies.itertools]
version = "0.14.0"

[dependencies.lz4]
optional = true
version = "1.28.1"

[dependencies.memmap2]
version = "0.9.5"

[dependencies.nanoid]
version = "0.4.0"

[dependencies.noodles-fasta]
default-features = false
version = "0.54.0"

[dependencies.num]
version = "0.4.3"

[dependencies.once_cell]
version = "1.21.3"

[dependencies.paste]
version = "1.0.15"

[dependencies.polars]
default-features = false
features = ["dtype-i16", "dtype-u16", "dtype-categorical", "dtype-struct", "strings", "cum_agg", "log", "lazy", "csv", "ipc", "partition_by", "is_in", "round_series", "fmt"]
version = "=0.45.0"

[dependencies.polars-arrow]
version = "=0.45.0"

[dependencies.rayon]
version = "1.10"

[dependencies.regex-lite]
version = "0.1.6"

[dependencies.rust-lapper]
features = ["serde", "with_serde"]
version = "1.1.0"

[dependencies.serde]
version = "1.0.217"

[dependencies.serde_json]
version = "1"

[dependencies.slotmap]
version = "1.0.7"

[dependencies.smallvec]
optional = true
version = "1.15.0"

[dependencies.spipe]
version = "0.1.0"

[dependencies.statrs]
optional = true
version = "0.18.0"

[dependencies.tempfile]
optional = true
version = "3.15.0"

[dependencies.typed_floats]
features = ["serde"]
optional = true
version = "1.0.6"

[dependencies.xz2]
optional = true
version = "0.1.7"

[dependencies.zip]
optional = true
version = "=3.0.0"

[dependencies.zstd]
optional = true
version = "0.13.3"

[dev-dependencies.assert_approx_eq]
version = "1.1.0"

[dev-dependencies.rand]
features = ["std", "std_rng"]
version = "=0.8.5"

[dev-dependencies.rand_distr]
version = "=0.4.3"

[dev-dependencies.rstest]
version = "0.25.0"

[dev-dependencies.tempfile]
version = "3.15.0"

[features]
compression = ["zstd", "lz4", "flate2", "xz2", "bzip2", "zip", "tempfile"]
default = ["tools"]
performant = ["polars/performant", "polars/cse"]
performant_nightly = []
tools = ["dep:typed_floats", "dep:dbscan", "dep:smallvec", "dep:statrs"]

[lib]
name = "bsxplorer2"
path = "src/lib.rs"

[lints.rust.unexpected_cfgs]
check-cfg = ["cfg(coverage,coverage_nightly)"]
level = "warn"
priority = 0

[package]
authors = ["shitohana (kyudytskiy@gmail.com)"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = false
categories = ["science", "data-structures", "algorithms", "mathematics"]
description = "A high-performance library for bisulfite sequencing data analysis and DNA methylation research"
edition = "2021"
exclude = ["tests", "examples"]
keywords = ["bioinformatics", "methylation", "bisulfite", "epigenetics", "genomics"]
license-file = "LICENSE.md"
name = "bsxplorer2"
readme = "README.md"
repository = "https://github.com/shitohana/bsxplorer2"
version = "0.2.3"