version = 4
[[package]]
name = "aho-corasick"
version = "1.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916"
dependencies = [
"memchr",
]
[[package]]
name = "anstream"
version = "0.6.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "301af1932e46185686725e0fad2f8f2aa7da69dd70bf6ecc44d6b703844a3933"
dependencies = [
"anstyle",
"anstyle-parse",
"anstyle-query",
"anstyle-wincon",
"colorchoice",
"is_terminal_polyfill",
"utf8parse",
]
[[package]]
name = "anstyle"
version = "1.0.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "862ed96ca487e809f1c8e5a8447f6ee2cf102f846893800b20cebdf541fc6bbd"
[[package]]
name = "anstyle-parse"
version = "0.2.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4e7644824f0aa2c7b9384579234ef10eb7efb6a0deb83f9630a49594dd9c15c2"
dependencies = [
"utf8parse",
]
[[package]]
name = "anstyle-query"
version = "1.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6c8bdeb6047d8983be085bab0ba1472e6dc604e7041dbf6fcd5e71523014fae9"
dependencies = [
"windows-sys",
]
[[package]]
name = "anstyle-wincon"
version = "3.0.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "403f75924867bb1033c59fbf0797484329750cfbe3c4325cd33127941fabc882"
dependencies = [
"anstyle",
"once_cell_polyfill",
"windows-sys",
]
[[package]]
name = "anyhow"
version = "1.0.99"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b0674a1ddeecb70197781e945de4b3b8ffb61fa939a5597bcf48503737663100"
[[package]]
name = "bindgen"
version = "0.72.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "993776b509cfb49c750f11b8f07a46fa23e0a1386ffc01fb1e7d343efc387895"
dependencies = [
"bitflags",
"cexpr",
"clang-sys",
"itertools",
"log",
"prettyplease",
"proc-macro2",
"quote",
"regex",
"rustc-hash",
"shlex",
"syn",
]
[[package]]
name = "bitflags"
version = "2.9.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c8214115b7bf84099f1309324e63141d4c5d7cc26862f97a0a857dbefe165bd"
[[package]]
name = "bsalign"
version = "0.9.0"
dependencies = [
"anyhow",
"bsalign_sys",
"clap",
"noodles",
]
[[package]]
name = "bsalign_sys"
version = "0.9.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e96e074b86df362c56a4e946682b3500bd139075d3e1d85066e24270bed05ecc"
dependencies = [
"bindgen",
"cc",
]
[[package]]
name = "bstr"
version = "1.12.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "234113d19d0d7d613b40e86fb654acf958910802bcceab913a4f9e7cda03b1a4"
dependencies = [
"memchr",
"serde",
]
[[package]]
name = "bytes"
version = "1.10.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d71b6127be86fdcfddb610f7182ac57211d4b18a3e9c82eb2d17662f2227ad6a"
[[package]]
name = "cc"
version = "1.2.37"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "65193589c6404eb80b450d618eaf9a2cafaaafd57ecce47370519ef674a7bd44"
dependencies = [
"find-msvc-tools",
"shlex",
]
[[package]]
name = "cexpr"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6fac387a98bb7c37292057cffc56d62ecb629900026402633ae9160df93a8766"
dependencies = [
"nom",
]
[[package]]
name = "cfg-if"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
[[package]]
name = "clang-sys"
version = "1.8.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0b023947811758c97c59bf9d1c188fd619ad4718dcaa767947df1cadb14f39f4"
dependencies = [
"glob",
"libc",
"libloading",
]
[[package]]
name = "clap"
version = "4.5.47"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7eac00902d9d136acd712710d71823fb8ac8004ca445a89e73a41d45aa712931"
dependencies = [
"clap_builder",
"clap_derive",
]
[[package]]
name = "clap_builder"
version = "4.5.47"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2ad9bbf750e73b5884fb8a211a9424a1906c1e156724260fdae972f31d70e1d6"
dependencies = [
"anstream",
"anstyle",
"clap_lex",
"strsim",
]
[[package]]
name = "clap_derive"
version = "4.5.47"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bbfd7eae0b0f1a6e63d4b13c9c478de77c2eb546fba158ad50b4203dc24b9f9c"
dependencies = [
"heck",
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "clap_lex"
version = "0.7.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b94f61472cee1439c0b966b47e3aca9ae07e45d070759512cd390ea2bebc6675"
[[package]]
name = "colorchoice"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b05b61dc5112cbb17e4b6cd61790d9845d13888356391624cbe7e41efeac1e75"
[[package]]
name = "crossbeam-channel"
version = "0.5.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "82b8f8f868b36967f9606790d1903570de9ceaf870a7bf9fbbd3016d636a2cb2"
dependencies = [
"crossbeam-utils",
]
[[package]]
name = "crossbeam-utils"
version = "0.8.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d0a5c400df2834b80a4c3327b3aad3a4c4cd4de0629063962b03235697506a28"
[[package]]
name = "either"
version = "1.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "48c757948c5ede0e46177b7add2e67155f70e33c07fea8284df6576da70b3719"
[[package]]
name = "find-msvc-tools"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7fd99930f64d146689264c637b5af2f0233a933bef0d8570e2526bf9e083192d"
[[package]]
name = "glob"
version = "0.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a8d1add55171497b4705a648c6b583acafb01d58050a51727785f0b2c8e0a2b2"
[[package]]
name = "heck"
version = "0.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea"
[[package]]
name = "is_terminal_polyfill"
version = "1.70.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7943c866cc5cd64cbc25b2e01621d07fa8eb2a1a23160ee81ce38704e97b8ecf"
[[package]]
name = "itertools"
version = "0.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "413ee7dfc52ee1a4949ceeb7dbc8a33f2d6c088194d9f922fb8318faf1f01186"
dependencies = [
"either",
]
[[package]]
name = "libc"
version = "0.2.171"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c19937216e9d3aa9956d9bb8dfc0b0c8beb6058fc4f7a4dc4d850edf86a237d6"
[[package]]
name = "libloading"
version = "0.8.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fc2f4eb4bc735547cfed7c0a4922cbd04a4655978c09b54f1f7b228750664c34"
dependencies = [
"cfg-if",
"windows-targets",
]
[[package]]
name = "log"
version = "0.4.27"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "13dc2df351e3202783a1fe0d44375f7295ffb4049267b0f3018346dc122a1d94"
[[package]]
name = "memchr"
version = "2.7.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "78ca9ab1a0babb1e7d5695e3530886289c18cf2f87ec19a575a0abdce112e3a3"
[[package]]
name = "minimal-lexical"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "68354c5c6bd36d73ff3feceb05efa59b6acb7626617f4962be322a825e61f79a"
[[package]]
name = "nom"
version = "7.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d273983c5a657a70a3e8f2a01329822f3b8c8172b73826411a55751e404a0a4a"
dependencies = [
"memchr",
"minimal-lexical",
]
[[package]]
name = "noodles"
version = "0.110.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "34e7ed524a472dbd0dc69cc7b63408f37552e48460028af44a3024f2eb77f036"
dependencies = [
"noodles-fasta",
]
[[package]]
name = "noodles-bgzf"
version = "0.47.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4d22589ec50582fa0c3e629d27e5263fc5ff5d436955648ba601b7ac4155fbf2"
dependencies = [
"bytes",
"crossbeam-channel",
"zlib-rs",
]
[[package]]
name = "noodles-core"
version = "0.20.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c8dbac7c5f9a7de9fe45590f198a09697df631cd13d2060b4742cc48144555b0"
dependencies = [
"bstr",
]
[[package]]
name = "noodles-fasta"
version = "0.61.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f0e6a772d7a5cb566196d1a1806c4471ad63bc6ffad5b2d549e9602708a9aaab"
dependencies = [
"bstr",
"memchr",
"noodles-bgzf",
"noodles-core",
]
[[package]]
name = "once_cell_polyfill"
version = "1.70.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a4895175b425cb1f87721b59f0f286c2092bd4af812243672510e1ac53e2e0ad"
[[package]]
name = "prettyplease"
version = "0.2.31"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5316f57387668042f561aae71480de936257848f9c43ce528e311d89a07cadeb"
dependencies = [
"proc-macro2",
"syn",
]
[[package]]
name = "proc-macro2"
version = "1.0.94"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a31971752e70b8b2686d7e46ec17fb38dad4051d94024c88df49b667caea9c84"
dependencies = [
"unicode-ident",
]
[[package]]
name = "quote"
version = "1.0.40"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1885c039570dc00dcb4ff087a89e185fd56bae234ddc7f056a945bf36467248d"
dependencies = [
"proc-macro2",
]
[[package]]
name = "regex"
version = "1.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b544ef1b4eac5dc2db33ea63606ae9ffcfac26c1416a2806ae0bf5f56b201191"
dependencies = [
"aho-corasick",
"memchr",
"regex-automata",
"regex-syntax",
]
[[package]]
name = "regex-automata"
version = "0.4.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "809e8dc61f6de73b46c85f4c96486310fe304c434cfa43669d7b40f711150908"
dependencies = [
"aho-corasick",
"memchr",
"regex-syntax",
]
[[package]]
name = "regex-syntax"
version = "0.8.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b15c43186be67a4fd63bee50d0303afffcef381492ebe2c5d87f324e1b8815c"
[[package]]
name = "rustc-hash"
version = "2.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "357703d41365b4b27c590e3ed91eabb1b663f07c4c084095e60cbed4362dff0d"
[[package]]
name = "serde"
version = "1.0.219"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5f0e2c6ed6606019b4e29e69dbaba95b11854410e5347d525002456dbbb786b6"
dependencies = [
"serde_derive",
]
[[package]]
name = "serde_derive"
version = "1.0.219"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5b0276cf7f2c73365f7157c8123c21cd9a50fbbd844757af28ca1f5925fc2a00"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "shlex"
version = "1.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0fda2ff0d084019ba4d7c6f371c95d8fd75ce3524c3cb8fb653a3023f6323e64"
[[package]]
name = "strsim"
version = "0.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f"
[[package]]
name = "syn"
version = "2.0.100"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b09a44accad81e1ba1cd74a32461ba89dee89095ba17b32f5d03683b1b1fc2a0"
dependencies = [
"proc-macro2",
"quote",
"unicode-ident",
]
[[package]]
name = "unicode-ident"
version = "1.0.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5a5f39404a5da50712a4c1eecf25e90dd62b613502b7e925fd4e4d19b5c96512"
[[package]]
name = "utf8parse"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821"
[[package]]
name = "windows-sys"
version = "0.59.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1e38bc4d79ed67fd075bcc251a1c39b32a1776bbe92e5bef1f0bf1f8c531853b"
dependencies = [
"windows-targets",
]
[[package]]
name = "windows-targets"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973"
dependencies = [
"windows_aarch64_gnullvm",
"windows_aarch64_msvc",
"windows_i686_gnu",
"windows_i686_gnullvm",
"windows_i686_msvc",
"windows_x86_64_gnu",
"windows_x86_64_gnullvm",
"windows_x86_64_msvc",
]
[[package]]
name = "windows_aarch64_gnullvm"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3"
[[package]]
name = "windows_aarch64_msvc"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469"
[[package]]
name = "windows_i686_gnu"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b"
[[package]]
name = "windows_i686_gnullvm"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66"
[[package]]
name = "windows_i686_msvc"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66"
[[package]]
name = "windows_x86_64_gnu"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78"
[[package]]
name = "windows_x86_64_gnullvm"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
[[package]]
name = "windows_x86_64_msvc"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
[[package]]
name = "zlib-rs"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3be3d40e40a133f9c916ee3f9f4fa2d9d63435b5fbe1bfc6d9dae0aa0ada1513"