bqtools 0.4.8

A command-line tool for interacting with BINSEQ file formats.
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[[bin]]
name = "bqtools"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0.100"

[dependencies.binseq]
version = "0.7.5"

[dependencies.clap]
features = ["derive"]
version = "4.5.48"

[dependencies.csv]
version = "1.4.0"

[dependencies.env_logger]
version = "0.11.8"

[dependencies.gzp]
version = "2.0.0"

[dependencies.is-terminal]
version = "0.4.16"

[dependencies.itoa]
version = "1.0.15"

[dependencies.libc]
version = "0.2.177"

[dependencies.log]
version = "0.4.28"

[dependencies.memmap2]
version = "0.9.8"

[dependencies.niffler]
version = "3.0.0"

[dependencies.num_cpus]
version = "1.17.0"

[dependencies.paraseq]
features = ["htslib", "gcs"]
version = "0.4.3"

[dependencies.parking_lot]
version = "0.12.5"

[dependencies.rand]
version = "0.9.2"

[dependencies.regex]
version = "1.12.2"

[dependencies.sassy]
optional = true
version = "0.1.6"

[dependencies.walkdir]
version = "2.5.0"

[dependencies.zstd]
features = ["zstdmt"]
version = "0.13.3"

[dev-dependencies.bon]
version = "3.8.1"

[dev-dependencies.itertools]
version = "0.14.0"

[dev-dependencies.nucgen]
version = "0.2.0"

[dev-dependencies.tempfile]
version = "3.23.0"

[features]
fuzzy = ["sassy"]

[lints.clippy]
cast_possible_truncation = "allow"
cast_precision_loss = "allow"

[lints.clippy.pedantic]
level = "warn"
priority = -1

[package]
authors = ["Noam Teyssier <noam.teyssier@arcinstitute.org>"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = false
categories = ["command-line-utilities", "science::bioinformatics", "encoding"]
description = "A command-line tool for interacting with BINSEQ file formats."
edition = "2021"
keywords = ["bioinformatics", "binseq", "vbinseq", "file-format", "sequencing"]
license = "MIT"
name = "bqtools"
readme = "README.md"
repository = "https://github.com/arcinstitute/bqtools"
version = "0.4.8"

[profile.release]
codegen-units = 1
lto = true

[[test]]
name = "common"
path = "tests/common.rs"

[[test]]
name = "test_decode"
path = "tests/test_decode.rs"

[[test]]
name = "test_encode"
path = "tests/test_encode.rs"