# Summary
[Introduction](README.md)
# Getting Started
- [Installation](getting-started/installation.md)
- [Quick Start](getting-started/quick-start.md)
- [Core Concepts](getting-started/concepts.md)
- [Agent Setup](getting-started/agent-setup.md)
# Guides
- [Searching](guides/searching.md)
- [Indexing Documentation](guides/documentation.md)
- [Context Assembly](guides/context-assembly.md)
- [Git Coupling](guides/git-coupling.md)
- [Hotspots](guides/hotspots.md)
- [Deps & Refs](guides/deps-refs.md)
- [Multi-Repo](guides/multi-repo.md)
- [Tags & Effects](guides/tags.md)
- [Feedback System](guides/feedback.md)
- [Archive Integration](guides/archive.md)
- [SQL Sources](guides/sql-sources.md)
- [Automatic GPU Runtime](guides/gpu-runtime.md)
- [Watch & Automation](guides/watch-automation.md)
- [Hooks](guides/hooks.md)
- [Access Control (RBAC)](guides/access-control.md)
- [Context Bundles](guides/bundles.md)
- [Quipu Integration](guides/quipu-integration.md)
- [Governed Path Boundaries](guides/governed-boundaries.md)
# CLI Reference
- [Overview](cli/overview.md)
- [init](cli/init.md)
- [index](cli/index.md)
- [pack](cli/pack.md)
- [index-bead](cli/index-bead.md)
- [search](cli/search.md)
- [context](cli/context.md)
- [deps](cli/deps.md)
- [grep](cli/grep.md)
- [refs](cli/refs.md)
- [related](cli/related.md)
- [coverage](cli/coverage.md)
- [history](cli/history.md)
- [hotspots](cli/hotspots.md)
- [impact](cli/impact.md)
- [review](cli/review.md)
- [similar](cli/similar.md)
- [status](cli/status.md)
- [calibrate](cli/calibrate.md)
- [serve](cli/serve.md)
- [benchmark](cli/benchmark.md)
- [watch](cli/watch.md)
- [completions](cli/completions.md)
- [hook](cli/hook.md)
- [bead](cli/bead.md)
- [tour](cli/tour.md)
- [prime](cli/prime.md)
- [bundle](cli/bundle.md)
# MCP Integration
- [Overview](mcp/overview.md)
- [Tools Reference](mcp/tools.md)
- [Client Configuration](mcp/client-config.md)
- [HTTP Mode](mcp/http-mode.md)
# Configuration
- [Reference](config/reference.md)
- [Index Settings](config/index.md)
- [Search Settings](config/search.md)
- [Embedding Settings](config/embedding.md)
- [Hooks](config/hooks.md)
# Architecture
- [Overview](architecture/overview.md)
- [Storage & Data Flow](architecture/storage.md)
- [Embedding Pipeline](architecture/embedding.md)
- [Language Support](architecture/languages.md)
# Evaluation
- [Methodology](eval/overview.md)
- [Results Summary](eval/summary.md)
- [Historical Trends](eval/trends.md)
- [Project Catalog](eval/projects.md)
- [Cargo (Rust)](eval/cargo.md)
- [Polars (Rust)](eval/polars.md)
- [Ruff (Rust)](eval/ruff.md)
# Reference
- [Chunk Types](reference/chunk-types.md)
- [Search Modes](reference/search-modes.md)
- [Exit Codes](reference/exit-codes.md)
- [Glossary](reference/glossary.md)
# Appendix
- [The stack](stack.md)
- [Docs map](docs-map.md)
- [Vision](appendix/vision.md)
- [Roadmap](appendix/roadmap.md)
- [Changelog](appendix/changelog.md)
- [Contributing](appendix/contributing.md)