bixverse-methods 0.9.4

Bulk omics methods for bixverse: enrichment, graphs, ontologies, matrix factorisation and differential expression.
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "bixverse-methods"
version = "0.9.4"
authors = ["Gregor Lueg <gregorlueg@me.com>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Bulk omics methods for bixverse: enrichment, graphs, ontologies, matrix factorisation and differential expression."
readme = "README.md"
keywords = [
    "bioinformatics",
    "enrichment",
    "gsea",
    "nmf",
    "graph",
]
categories = [
    "science::computational-biology",
    "science::bioinformatics",
    "mathematics",
    "algorithms",
]
license = "MIT"
repository = "https://github.com/GregorLueg/bixverse-rs"

[features]
dge = ["dep:edge-rs"]
large-test = []
large_scale_diagnostics = []

[lib]
name = "bixverse_methods"
path = "src/lib.rs"

[[test]]
name = "umap_graph_parity"
path = "tests/umap_graph_parity.rs"

[dependencies.ann-search-rs]
version = "0.11.2"
default-features = false

[dependencies.approx]
version = "0.5.1"

[dependencies.bixverse-core]
version = "0.9.4"
default-features = false

[dependencies.bixverse-sparse]
version = "0.9.4"
default-features = false

[dependencies.document-features]
version = "0.2.12"

[dependencies.edge-rs]
version = "0.3.1"
optional = true

[dependencies.faer]
version = "0.24.4"
features = [
    "std",
    "rayon",
    "sparse-linalg",
    "rand",
]
default-features = false

[dependencies.num-traits]
version = "0.2.19"

[dependencies.once_cell]
version = "1.21.3"

[dependencies.rand]
version = "0.9.2"

[dependencies.rand_distr]
version = "0.5.1"

[dependencies.rayon]
version = "1.11.0"

[dependencies.rustc-hash]
version = "2.1.1"

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.statrs]
version = "0.18.0"

[dependencies.thiserror]
version = "2.0.18"