Example on how to build (short) k-mers for DNA sequences,
How to build:
--------------
0. use project make file
OR
1. apply environment variables at the BitMagic project root:
>. ./bmenv.sh
or
>source ./bmenv.sh
2. Build regular version:
>make rebuild
or AVX2
make BMOPTFLAGS=-DBMAVX2OPT rebuild
OR just use (it will use GCC to create all build variants)
>./build_all.sh
How to run:
------------
Help:
>./xsample07 -h
Process FASTA file with a set of DNA sequences to build k-mers:
./xsample07a -fa all.fasta -kd pa_vect_coll.kd -k 16 -t -j 4
Load k-mer collection to memory:
./xsample07a -kd pa_vect_coll.kd -k 16 -t -j 4