biovault 0.1.68

A bioinformatics data vault CLI tool
Documentation 
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sample_data_urls:
  NA06985:
    ref_version: GRCh38
    ref: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/GRCh38_reference_genome/GRCh38_full_analysis_set_plus_decoy_hla.fa
    ref_index: https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/GRCh38_reference_genome/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai
    aligned: https://ftp-trace.ncbi.nih.gov/1000genomes/ftp/1000G_2504_high_coverage/data/ERR3239276/NA06985.final.cram
    aligned_index: https://ftp-trace.ncbi.nih.gov/1000genomes/ftp/1000G_2504_high_coverage/data/ERR3239276/NA06985.final.cram.crai
    # BLAKE3 checksums for verification (much faster than SHA-256)
    ref_b3sum: "49cbaceaf79ebc1da6581b2f7599cb03e6552ccce87584d1a0eaec59c3629368"
    ref_index_b3sum: "002cf8e0066a2226616b5d9cc09994ac06831cd907e13e521bef6dc69403d147"
    aligned_b3sum: "4556b84f32e58e1a5c4d7238352e9fc0bcaabd2478250733252f2b76047ba3ca"
    aligned_index_b3sum: "6914d3c6842670bdde272b8cc4dfaf858a84f379e9e79d8b24c1a89d577262e2"

  NA06985-chrY:
    ref_version: GRCh38
    ref: https://github.com/OpenMined/biovault-data/raw/main/cram/reference/GRCh38_chrY.fa
    ref_index: https://github.com/OpenMined/biovault-data/raw/main/cram/reference/GRCh38_chrY.fa.fai
    aligned:
      - https://github.com/OpenMined/biovault-data/raw/main/cram/NA06985/NA06985.final.chrY.cram.tar.gz.aa
      - https://github.com/OpenMined/biovault-data/raw/main/cram/NA06985/NA06985.final.chrY.cram.tar.gz.ab
    aligned_index: https://raw.githubusercontent.com/OpenMined/biovault-data/refs/heads/main/cram/NA06985/NA06985.final.chrY.cram.crai
    # BLAKE3 checksums for verification (much faster than SHA-256)
    ref_b3sum: "e99264162b31a3f59e8cf2c1fc81c7b791f60e8fbf68425f70dcecae7e588e36"
    ref_index_b3sum: "1000a2e4c9465af618eb7433883b203b8ab9f5702b9b9c1f9504a0214090a35a"
    # Split file checksums for the tar.gz parts
    aligned_b3sum:
      - "fc07b607f8373f5bd832dc0d967deaa926b2eb2aee59968657f5c1e30457e3ad"
      - "1d23cd4a5c8c16805e5a4af602c5c209a83c618f4f133e274bcdbb74d3be5f65"
    aligned_index_b3sum: "f81bad3f1c7aeb1ed7b8cca3d911b57892f82c9b6a3e57786fcafe7ed64c74ae"

  23andme:
    snp: https://github.com/OpenMined/biovault-data/raw/main/snp/23andme_genome_v4_Full.zip
    snp_b3sum: "2f4aeca4ff424abcc187fcecc0f3776376a43ea674a9498c9b24b4ad4964ccea"
    snp_post_process:
      uncompress: true
      file: genome_Zeeshan_Usamani_v4_Full.txt