workflow USER {
take:
participant_id_ch
ref_ch
ref_index_ch
aligned_ch
aligned_index_ch
ref_version
assets_dir_ch
results_dir
main:
// your code here
println "Participant ID Channel: ${participant_id_ch}"
println "Reference Channel: ${ref_ch}"
println "Reference Index Channel: ${ref_index_ch}"
println "Aligned Channel: ${aligned_ch}"
println "Aligned Index Channel: ${aligned_index_ch}"
println "Reference Version: ${ref_version}"
println "Assets Directory Channel: ${assets_dir_ch}"
println "Results Directory: ${results_dir}"
}