biov 0.1.2

A uv-style tool manager for bioinformatics: reproducible Docker-backed tools with digest-pinned lockfiles (installs as `bv`)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40

---
source: bv-cli/src/commands/show.rs
expression: json
---
{
  "schema_version": "1.0",
  "tool": {
    "id": "blast",
    "version": "2.15.0",
    "description": "BLAST+ Basic Local Alignment Search Tool",
    "homepage": "https://blast.ncbi.nlm.nih.gov/Blast.cgi",
    "license": "Public Domain",
    "image": {
      "backend": "docker",
      "reference": "ncbi/blast:2.15.0"
    },
    "inputs": [
      {
        "name": "query",
        "type": "fasta",
        "cardinality": "one",
        "description": "Query sequences in FASTA format"
      },
      {
        "name": "db",
        "type": "blast_db",
        "cardinality": "one",
        "description": "BLAST database directory"
      }
    ],
    "outputs": [
      {
        "name": "output",
        "type": "blast_tab",
        "cardinality": "one",
        "description": "Tabular BLAST results"
      }
    ]
  }
}