biosynth 0.1.11

Biosynth CLI: synthetic data generator for BioVault
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.91"
name = "biosynth"
version = "0.1.11"
authors = ["Madhava Jay <madhava@openmined.org>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Biosynth CLI: synthetic data generator for BioVault"
readme = false
keywords = [
    "cli",
    "bioinformatics",
    "data",
    "synthetic",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "Apache-2.0"
repository = "https://github.com/openmined/biosynth"

[[bin]]
name = "bvs"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.chrono]
version = "0.4"
features = ["serde"]

[dependencies.clap]
version = "4.5"
features = ["derive"]

[dependencies.csv]
version = "1.3"

[dependencies.indicatif]
version = "0.17"

[dependencies.noodles]
version = "0.104.0"
features = [
    "vcf",
    "tabix",
    "bgzf",
    "core",
]

[dependencies.rand]
version = "0.8"
features = ["std"]

[dependencies.rayon]
version = "1.10"

[dependencies.reqwest]
version = "0.12"
features = [
    "blocking",
    "json",
    "rustls-tls",
]
default-features = false

[dependencies.rusqlite]
version = "0.32"
features = ["bundled"]

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.thiserror]
version = "1.0"

[dependencies.walkdir]
version = "2.4"

[dev-dependencies]