biors 0.58.0

Command-line tools for bio-rs biological AI model input workflows.
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pub mod args;
mod batch;
mod dataset;
mod debug;
mod diff;
mod doctor;
pub mod handlers;
mod molecule_args;
mod package;
mod package_args;
mod package_convert;
mod package_convert_layout;
mod package_init;
mod package_skeleton;
mod package_skeleton_files;
mod pipeline;
mod pipeline_config;
mod pipeline_lock;
mod pipeline_output;
mod profile_args;
mod report;
mod report_args;
mod serve;
mod serve_args;
mod serve_handlers;
mod serve_http;
mod service_args;
mod structure_args;
pub(crate) mod tokenizer_convert;
mod workflow;
pub use args::{
    BatchCommand, Cli, Command, DatasetCommand, FastaCommand, FormatArg, FormatsCommand, KindArg,
    PaddingArg, SeqCommand, TokenizerCommand,
};
pub(crate) use batch::run_batch_command;
pub(crate) use dataset::run_dataset_command;
pub(crate) use debug::run_debug;
pub(crate) use diff::run_diff;
pub(crate) use doctor::build_doctor_report;
pub use handlers::run;
pub use molecule_args::{MoleculeCommand, MoleculeFormatArg};
pub(crate) use package::run_package_command;
pub use package_args::{
    PackageCommand, PackageConvertArgs, PackageConvertProjectArgs, PackageInitArgs,
};
pub(crate) use package_convert::run_package_convert;
pub(crate) use package_init::{run_package_convert_project, run_package_init};
pub(crate) use pipeline::{run_pipeline, PipelineRunOptions};
pub use profile_args::TokenizerProfileArg;
pub(crate) use report::run_report_command;
pub use report_args::ReportCommand;
pub(crate) use serve::run_serve;
pub use service_args::ServiceCommand;
pub use structure_args::{StructureCommand, StructureFormatArg};
pub(crate) use workflow::run_workflow;