biopath 0.2.0

Shortest paths in biological overlap graphs with or without indexing.
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "biopath"
version = "0.2.0"
authors = ["Sebastian Schmidt <sebastian.schmidt@helsinki.fi>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Shortest paths in biological overlap graphs with or without indexing."
readme = false
license = "BSD-2-Clause"
repository = "https://github.com/sebschmi/biopath"

[[bin]]
name = "biopath"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0.102"

[dependencies.bidirected-adjacency-array]
version = "1.1.0"

[dependencies.clap]
version = "4.5.60"
features = ["derive"]

[dependencies.flate2]
version = "1.1.9"

[dependencies.indicatif]
version = "0.18.4"

[dependencies.itertools]
version = "0.14.0"

[dependencies.log]
version = "0.4.29"

[dependencies.serde]
version = "1.0.228"
features = ["derive"]

[dependencies.serde_json]
version = "1.0.149"

[dependencies.simplelog]
version = "0.12.2"

[dependencies.spqr-shortest-path-index]
version = "1.1.0"
features = ["binary-io"]

[dependencies.spqr-tree]
version = "2.0.0"

[dependencies.toml]
version = "1.0.3"