biolib 1.3.117

BioLib client library and CLI for running applications on BioLib
Documentation 
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use crate::api::ApiClient;
use crate::types::job::ExperimentDict;
use crate::Job;

pub struct Experiment {
    uuid: String,
    name: String,
    api_client: ApiClient,
}

impl Experiment {
    pub fn create_or_get(uri_or_name: &str) -> crate::Result<Self> {
        let config = crate::Config::load();
        let mut api_client = ApiClient::new(&config)?;
        let response = api_client.create_or_get_experiment(uri_or_name)?;

        Ok(Self {
            uuid: response.uuid,
            name: uri_or_name.to_string(),
            api_client,
        })
    }

    pub fn get_by_uri(uri: &str) -> crate::Result<Self> {
        let config = crate::Config::load();
        let mut api_client = ApiClient::new(&config)?;
        let resource = api_client.get_resource(uri)?;

        Ok(Self {
            uuid: resource.uuid,
            name: resource.name,
            api_client,
        })
    }

    pub fn uuid(&self) -> &str {
        &self.uuid
    }

    pub fn name(&self) -> &str {
        &self.name
    }

    pub fn add_job(&mut self, job: &Job) -> crate::Result<()> {
        self.api_client
            .add_job_to_experiment(&self.uuid, job.id())?;
        Ok(())
    }

    pub fn get_jobs(&mut self, count: usize, status: Option<&str>) -> crate::Result<Vec<Job>> {
        let page_size = std::cmp::min(count, 1_000);
        let response = self
            .api_client
            .get_experiment_jobs(&self.uuid, page_size, status, None)?;

        let mut jobs: Vec<Job> = Vec::new();
        for jd in response.results {
            if let Ok(job) = Job::from_uuid(&self.api_client, &jd.uuid, Some(&jd.auth_token)) {
                jobs.push(job);
            }
        }

        for page_number in 2..=response.page_count {
            if jobs.len() >= count {
                break;
            }
            let page_response = self.api_client.get_experiment_jobs(
                &self.uuid,
                page_size,
                status,
                Some(page_number),
            )?;
            for jd in page_response.results {
                if let Ok(job) = Job::from_uuid(&self.api_client, &jd.uuid, Some(&jd.auth_token)) {
                    jobs.push(job);
                }
            }
        }

        jobs.truncate(count);
        Ok(jobs)
    }

    pub fn wait(&mut self) -> crate::Result<()> {
        loop {
            let mut all_done = true;
            let mut jobs = self.get_jobs(1000, None)?;
            for job in &mut jobs {
                if !job.is_finished()? {
                    all_done = false;
                    break;
                }
            }
            if all_done {
                break;
            }
            std::thread::sleep(std::time::Duration::from_secs(5));
        }
        Ok(())
    }

    pub fn show_experiments(count: usize) -> crate::Result<Vec<ExperimentDict>> {
        let config = crate::Config::load();
        let mut api_client = ApiClient::new(&config)?;
        let response = api_client.get_experiments(count)?;
        Ok(response.results)
    }
}