{
"repository": "https://github.com/PeptoneLtd/proteinmpnn_ddg",
"commit": "98302b5e7d6b2962aa03336cf950196c33f2c3a1",
"input_reference": "https://github.com/PeptoneLtd/proteinmpnn_ddg/blob/98302b5e7d6b2962aa03336cf950196c33f2c3a1/predict.py",
"example_reference": "https://github.com/PeptoneLtd/proteinmpnn_ddg/blob/98302b5e7d6b2962aa03336cf950196c33f2c3a1/README.md#usage",
"assets": [
{
"path": "example/AF-A0A7L5GP87-F1-model_v4.pdb",
"source_url": "https://github.com/PeptoneLtd/proteinmpnn_ddg/blob/98302b5e7d6b2962aa03336cf950196c33f2c3a1/example/AF-A0A7L5GP87-F1-model_v4.pdb",
"sha256": "2070d3ba85e0c4814558e184ce8ac4130734d983e65910cdb7498f474ebf1c6e",
"normalization": "A final newline was added when embedding the upstream text asset."
},
{
"path": "LICENSE",
"source_url": "https://github.com/PeptoneLtd/proteinmpnn_ddg/blob/98302b5e7d6b2962aa03336cf950196c33f2c3a1/LICENSE",
"sha256": "e76c415443be9d463ca6b3494b34819b0778b5ca536cf8de2e08f89a925a997f"
}
],
"adaptations": [
"The web/API field names and defaults follow predict.py; uploaded PDB contents are written to a per-job pdb_path and outpath is managed by the service.",
"The official CLI always predicts every standard point mutation for one chain, so no top-k mode is added.",
"The job_name field labels the service run and is not passed to the upstream CLI."
],
"validation": {
"date": "2026-09-09",
"runtime": "Ubuntu 26.04, official v_48_020 model",
"official_examples": 1,
"checks": [
"Ran the bundled README PDB with its documented chain, seed, and model settings.",
"Verified 4,300 mutation rows and the native pre, post, pos, logit_difference, and logit_difference_ddg columns.",
"Compared every displayed field, default, and managed argument with predict.py."
]
}
}