bio_apis 0.1.9

DNA and RNA sequence types and functions
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# Biology APIs


[![Crate](https://img.shields.io/crates/v/bio_apis.svg)](https://crates.io/crates/bio_apis)
[![Docs](https://docs.rs/bio_apis/badge.svg)](https://docs.rs/bio_apis)


This library contains abstractions to interact with biology-related public HTTP APIs. It includes functionality related to the following:

It uses rigid data structures for requests and responses, and enums where possible to constrain API options.

## Example functionality:

  - Download molecule data in various formats (e.g. CIF, SDF)
  - Open your default web browser to a  molecule's overview page, 3D structure etc
  - Search APIs for molecule data, or filter and return a list of IDs.
  - Load all information on a protein from the RCSB data API

Example of various API functionality:

```rust
let data = bio_apis::rcsb::get_all_data("1ba3")?;

let data = amber_geostd::find_mols(&lig.common.ident).unwrap();

let cif_text = rcsb::load_cif(ident).unwrap();

let sdf_data = drugbank::load_sdf(ident).unwrap();
let sdf_data = pubchem::load_sdf(ident).unwrap();

pubchem::open_overview(ident);
```


WIP: Many features unsupported. Implementing as used by Daedelus and PlasCAD.

## API support

- [RCSB](https://data.rcsb.org/) (Protein data bank)
- [PubChem](https://pubchem.ncbi.nlm.nih.gov/docs/pug-rest)
- [PDBe](https://www.ebi.ac.uk/pdbe/)
- [DrugBank](https://docs.drugbank.com/v1/)
- [NCBI BLAST](https://blast.ncbi.nlm.nih.gov/Blast.cgi)
- [LMSD](https://www.lipidmaps.org)
- Mol2, FRCMOD, and Lib data for Amber Geostd organic molecules

See the [API docs](https://docs.rs/bio_apis) for functionality.