bio 4.0.0

A bioinformatics library for Rust. This library provides implementations of many algorithms and data structures that are useful for bioinformatics, but also in other fields.
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2018"
name = "bio"
version = "4.0.0"
authors = ["Johannes Köster <johannes.koester@tu-dortmund.de>"]
build = false
include = [
    "src/**/*",
    "LICENSE.md",
    "README.md",
    "CHANGELOG.md",
    "build.rs",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A bioinformatics library for Rust. This library provides implementations of many algorithms and data structures that are useful for bioinformatics, but also in other fields."
homepage = "https://rust-bio.github.io"
documentation = "https://docs.rs/bio"
readme = "README.md"
keywords = [
    "bioinformatics",
    "alignment",
    "fasta",
    "suffix-array",
    "pattern-matching",
]
categories = [
    "science::bioinformatics",
    "algorithms",
    "data-structures",
    "parser-implementations",
]
license = "MIT"
repository = "https://github.com/rust-bio/rust-bio"

[package.metadata.release]
pre-release-commit-message = "release version {{version}}"
tag-message = "Version {{version}} of Rust-Bio."

[features]
generic-simd = ["bytecount/generic-simd"]
phylogeny = [
    "pest",
    "pest_derive",
    "bio-types/phylogeny",
]
runtime-dispatch-simd = ["bytecount/runtime-dispatch-simd"]

[lib]
name = "bio"
path = "src/lib.rs"

[dependencies.approx]
version = ">=0.3, <0.6"

[dependencies.bio-types]
version = ">=1.0.0"

[dependencies.bit-set]
version = "0.10"

[dependencies.bv]
version = "0.11"
features = ["serde"]

[dependencies.bytecount]
version = "0.6"

[dependencies.csv]
version = "1.1"

[dependencies.custom_derive]
version = "0.1"

[dependencies.derefable]
version = "0.1.0"

[dependencies.editdistancek]
version = ">=1.0.1, <2"

[dependencies.enum-map]
version = ">=0.6.4, <3"

[dependencies.fxhash]
version = "0.2"

[dependencies.getset]
version = "0.1.6"

[dependencies.itertools]
version = ">=0.8, <0.15"

[dependencies.itertools-num]
version = "0.1"

[dependencies.multimap]
version = ">=0.6, <0.11"

[dependencies.ndarray]
version = ">=0.16, <0.18"

[dependencies.newtype_derive]
version = "0.1"

[dependencies.num-integer]
version = "0.1"

[dependencies.num-traits]
version = "0.2"

[dependencies.ordered-float]
version = "5.0"

[dependencies.pest]
version = "2"
optional = true

[dependencies.pest_derive]
version = "2"
optional = true

[dependencies.petgraph]
version = ">=0.4, <0.9"
features = ["stable_graph"]

[dependencies.regex]
version = "1.3"
features = [
    "std",
    "perf",
]
default-features = false

[dependencies.serde]
version = "1.0"

[dependencies.serde_derive]
version = "1.0"

[dependencies.statrs]
version = ">= 0.11, < 0.19"

[dependencies.strum]
version = ">= 0.16, < 0.29"

[dependencies.strum_macros]
version = ">= 0.16, < 0.29"

[dependencies.thiserror]
version = "2"

[dependencies.triple_accel]
version = ">=0.3, <0.5"

[dependencies.vec_map]
version = "0.8"
features = ["eders"]

[dev-dependencies.proptest]
version = "1"

[dev-dependencies.rand]
version = "0.10.1"

[dev-dependencies.tempfile]
version = "3.1.0"