bio-seq 0.15.0

Bit packed and well-typed biological sequences
Documentation
# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
rust-version = "1.85"
name = "bio-seq"
version = "0.15.0"
authors = ["jeff-k <jeff_k@fastmail.com>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Bit packed and well-typed biological sequences"
documentation = "https://docs.rs/bio-seq"
readme = "README.md"
keywords = [
    "bioinformatics",
    "genomics",
    "kmer",
    "dna",
    "sequence",
]
categories = [
    "science::bioinformatics",
    "science::bioinformatics::genomics",
    "science::bioinformatics::proteomics",
    "science::bioinformatics::sequence-analysis",
]
license = "MIT"
repository = "https://github.com/jeff-k/bio-seq"
resolver = "2"

[package.metadata.docs.rs]
features = [
    "translation",
    "serde",
    "extra_codecs",
]
all-features = true

[features]
extra_codecs = []
serde = [
    "dep:serde",
    "dep:serde_derive",
    "bitvec/serde",
]
translation = []

[lib]
name = "bio_seq"
path = "src/lib.rs"

[[example]]
name = "aminokmers"
path = "examples/aminokmers.rs"
required-features = ["noodles/fasta"]

[[example]]
name = "codec-bench"
path = "examples/codec-bench.rs"
required-features = ["extra_codecs"]

[[example]]
name = "seq2bin"
path = "examples/seq2bin.rs"
required-features = [
    "serde",
    "noodles/fasta",
]

[dependencies.bio-seq-derive]
version = "4.12"

[dependencies.bitvec]
version = "1"

[dependencies.serde]
version = "1"
features = ["derive"]
optional = true

[dependencies.serde_derive]
version = "1"
optional = true

[dev-dependencies.ciborium]
version = "0.2"

[dev-dependencies.clap]
version = "4"
features = ["derive"]

[dev-dependencies.noodles]
version = "0.116"
features = ["fasta"]

[dev-dependencies.tempfile]
version = "3.27"

[target.'cfg(target_arch = "wasm32")'.dev-dependencies.wasm-bindgen-test]
version = "0.3"