[package]
edition = "2024"
rust-version = "1.85"
name = "bio-seq"
version = "0.15.0"
authors = ["jeff-k <jeff_k@fastmail.com>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Bit packed and well-typed biological sequences"
documentation = "https://docs.rs/bio-seq"
readme = "README.md"
keywords = [
"bioinformatics",
"genomics",
"kmer",
"dna",
"sequence",
]
categories = [
"science::bioinformatics",
"science::bioinformatics::genomics",
"science::bioinformatics::proteomics",
"science::bioinformatics::sequence-analysis",
]
license = "MIT"
repository = "https://github.com/jeff-k/bio-seq"
resolver = "2"
[package.metadata.docs.rs]
features = [
"translation",
"serde",
"extra_codecs",
]
all-features = true
[features]
extra_codecs = []
serde = [
"dep:serde",
"dep:serde_derive",
"bitvec/serde",
]
translation = []
[lib]
name = "bio_seq"
path = "src/lib.rs"
[[example]]
name = "aminokmers"
path = "examples/aminokmers.rs"
required-features = ["noodles/fasta"]
[[example]]
name = "codec-bench"
path = "examples/codec-bench.rs"
required-features = ["extra_codecs"]
[[example]]
name = "seq2bin"
path = "examples/seq2bin.rs"
required-features = [
"serde",
"noodles/fasta",
]
[dependencies.bio-seq-derive]
version = "4.12"
[dependencies.bitvec]
version = "1"
[dependencies.serde]
version = "1"
features = ["derive"]
optional = true
[dependencies.serde_derive]
version = "1"
optional = true
[dev-dependencies.ciborium]
version = "0.2"
[dev-dependencies.clap]
version = "4"
features = ["derive"]
[dev-dependencies.noodles]
version = "0.116"
features = ["fasta"]
[dev-dependencies.tempfile]
version = "3.27"
[target.'cfg(target_arch = "wasm32")'.dev-dependencies.wasm-bindgen-test]
version = "0.3"