version = 4
[[package]]
name = "aho-corasick"
version = "1.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916"
dependencies = [
"memchr",
]
[[package]]
name = "anes"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299"
[[package]]
name = "anstyle"
version = "1.0.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "862ed96ca487e809f1c8e5a8447f6ee2cf102f846893800b20cebdf541fc6bbd"
[[package]]
name = "anyhow"
version = "1.0.98"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e16d2d3311acee920a9eb8d33b8cbc1787ce4a264e85f964c2404b969bdcd487"
[[package]]
name = "autocfg"
version = "1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c08606f8c3cbf4ce6ec8e28fb0014a2c086708fe954eaa885384a6165172e7e8"
[[package]]
name = "bedrs"
version = "0.2.26"
dependencies = [
"anyhow",
"bedrs_derive",
"bincode",
"criterion",
"csv",
"derive-new 0.6.0",
"getset",
"num-traits",
"rand",
"rand_chacha",
"rayon",
"rust-htslib",
"serde",
"thiserror 1.0.69",
"tinystr 0.7.6",
]
[[package]]
name = "bedrs_derive"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "175ba90281927a8fdf7c4e1a6a7dee5d530bd5965bde1978d982b442a84d042e"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "bincode"
version = "1.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b1f45e9417d87227c7a56d22e471c6206462cba514c7590c09aff4cf6d1ddcad"
dependencies = [
"serde",
]
[[package]]
name = "bindgen"
version = "0.69.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "271383c67ccabffb7381723dea0672a673f292304fcb45c01cc648c7a8d58088"
dependencies = [
"bitflags",
"cexpr",
"clang-sys",
"itertools",
"lazy_static",
"lazycell",
"proc-macro2",
"quote",
"regex",
"rustc-hash",
"shlex",
"syn",
]
[[package]]
name = "bio-types"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f4dcf54f8b7f51450207d54780bab09c05f30b8b0caa991545082842e466ad7e"
dependencies = [
"derive-new 0.6.0",
"lazy_static",
"regex",
"strum_macros",
"thiserror 1.0.69",
]
[[package]]
name = "bitflags"
version = "2.9.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1b8e56985ec62d17e9c1001dc89c88ecd7dc08e47eba5ec7c29c7b5eeecde967"
[[package]]
name = "bumpalo"
version = "3.19.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "46c5e41b57b8bba42a04676d81cb89e9ee8e859a1a66f80a5a72e1cb76b34d43"
[[package]]
name = "byteorder"
version = "1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b"
[[package]]
name = "bzip2-sys"
version = "0.1.13+1.0.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "225bff33b2141874fe80d71e07d6eec4f85c5c216453dd96388240f96e1acc14"
dependencies = [
"cc",
"pkg-config",
]
[[package]]
name = "cast"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "37b2a672a2cb129a2e41c10b1224bb368f9f37a2b16b612598138befd7b37eb5"
[[package]]
name = "cc"
version = "1.2.31"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c3a42d84bb6b69d3a8b3eaacf0d88f179e1929695e1ad012b6cf64d9caaa5fd2"
dependencies = [
"jobserver",
"libc",
"shlex",
]
[[package]]
name = "cexpr"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6fac387a98bb7c37292057cffc56d62ecb629900026402633ae9160df93a8766"
dependencies = [
"nom",
]
[[package]]
name = "cfg-if"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9555578bc9e57714c812a1f84e4fc5b4d21fcb063490c624de019f7464c91268"
[[package]]
name = "ciborium"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "42e69ffd6f0917f5c029256a24d0161db17cea3997d185db0d35926308770f0e"
dependencies = [
"ciborium-io",
"ciborium-ll",
"serde",
]
[[package]]
name = "ciborium-io"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "05afea1e0a06c9be33d539b876f1ce3692f4afea2cb41f740e7743225ed1c757"
[[package]]
name = "ciborium-ll"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "57663b653d948a338bfb3eeba9bb2fd5fcfaecb9e199e87e1eda4d9e8b240fd9"
dependencies = [
"ciborium-io",
"half",
]
[[package]]
name = "clang-sys"
version = "1.8.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0b023947811758c97c59bf9d1c188fd619ad4718dcaa767947df1cadb14f39f4"
dependencies = [
"glob",
"libc",
"libloading",
]
[[package]]
name = "clap"
version = "4.5.42"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ed87a9d530bb41a67537289bafcac159cb3ee28460e0a4571123d2a778a6a882"
dependencies = [
"clap_builder",
]
[[package]]
name = "clap_builder"
version = "4.5.42"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "64f4f3f3c77c94aff3c7e9aac9a2ca1974a5adf392a8bb751e827d6d127ab966"
dependencies = [
"anstyle",
"clap_lex",
]
[[package]]
name = "clap_lex"
version = "0.7.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b94f61472cee1439c0b966b47e3aca9ae07e45d070759512cd390ea2bebc6675"
[[package]]
name = "cmake"
version = "0.1.54"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e7caa3f9de89ddbe2c607f4101924c5abec803763ae9534e4f4d7d8f84aa81f0"
dependencies = [
"cc",
]
[[package]]
name = "criterion"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f2b12d017a929603d80db1831cd3a24082f8137ce19c69e6447f54f5fc8d692f"
dependencies = [
"anes",
"cast",
"ciborium",
"clap",
"criterion-plot",
"is-terminal",
"itertools",
"num-traits",
"once_cell",
"oorandom",
"plotters",
"rayon",
"regex",
"serde",
"serde_derive",
"serde_json",
"tinytemplate",
"walkdir",
]
[[package]]
name = "criterion-plot"
version = "0.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6b50826342786a51a89e2da3a28f1c32b06e387201bc2d19791f622c673706b1"
dependencies = [
"cast",
"itertools",
]
[[package]]
name = "crossbeam-deque"
version = "0.8.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9dd111b7b7f7d55b72c0a6ae361660ee5853c9af73f70c3c2ef6858b950e2e51"
dependencies = [
"crossbeam-epoch",
"crossbeam-utils",
]
[[package]]
name = "crossbeam-epoch"
version = "0.9.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5b82ac4a3c2ca9c3460964f020e1402edd5753411d7737aa39c3714ad1b5420e"
dependencies = [
"crossbeam-utils",
]
[[package]]
name = "crossbeam-utils"
version = "0.8.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d0a5c400df2834b80a4c3327b3aad3a4c4cd4de0629063962b03235697506a28"
[[package]]
name = "crunchy"
version = "0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "460fbee9c2c2f33933d720630a6a0bac33ba7053db5344fac858d4b8952d77d5"
[[package]]
name = "csv"
version = "1.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "acdc4883a9c96732e4733212c01447ebd805833b7275a73ca3ee080fd77afdaf"
dependencies = [
"csv-core",
"itoa",
"ryu",
"serde",
]
[[package]]
name = "csv-core"
version = "0.1.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7d02f3b0da4c6504f86e9cd789d8dbafab48c2321be74e9987593de5a894d93d"
dependencies = [
"memchr",
]
[[package]]
name = "curl-sys"
version = "0.4.82+curl-8.14.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c4d63638b5ec65f1a4ae945287b3fd035be4554bbaf211901159c9a2a74fb5be"
dependencies = [
"cc",
"libc",
"libz-sys",
"openssl-sys",
"pkg-config",
"vcpkg",
"windows-sys",
]
[[package]]
name = "custom_derive"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9"
[[package]]
name = "derive-new"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d150dea618e920167e5973d70ae6ece4385b7164e0d799fe7c122dd0a5d912ad"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "derive-new"
version = "0.7.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2cdc8d50f426189eef89dac62fabfa0abb27d5cc008f25bf4156a0203325becc"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "displaydoc"
version = "0.2.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "97369cbbc041bc366949bc74d34658d6cda5621039731c6310521892a3a20ae0"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "either"
version = "1.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "48c757948c5ede0e46177b7add2e67155f70e33c07fea8284df6576da70b3719"
[[package]]
name = "form_urlencoded"
version = "1.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e13624c2627564efccf4934284bdd98cbaa14e79b0b5a141218e507b3a823456"
dependencies = [
"percent-encoding",
]
[[package]]
name = "fs-utils"
version = "1.1.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6fc7a9dc005c944c98a935e7fd626faf5bf7e5a609f94bc13e42fc4a02e52593"
dependencies = [
"quick-error",
]
[[package]]
name = "getrandom"
version = "0.2.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "335ff9f135e4384c8150d6f27c6daed433577f86b4750418338c01a1a2528592"
dependencies = [
"cfg-if",
"libc",
"wasi 0.11.1+wasi-snapshot-preview1",
]
[[package]]
name = "getrandom"
version = "0.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "26145e563e54f2cadc477553f1ec5ee650b00862f0a58bcd12cbdc5f0ea2d2f4"
dependencies = [
"cfg-if",
"libc",
"r-efi",
"wasi 0.14.2+wasi-0.2.4",
]
[[package]]
name = "getset"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9cf0fc11e47561d47397154977bc219f4cf809b2974facc3ccb3b89e2436f912"
dependencies = [
"proc-macro-error2",
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "glob"
version = "0.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a8d1add55171497b4705a648c6b583acafb01d58050a51727785f0b2c8e0a2b2"
[[package]]
name = "half"
version = "2.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "459196ed295495a68f7d7fe1d84f6c4b7ff0e21fe3017b2f283c6fac3ad803c9"
dependencies = [
"cfg-if",
"crunchy",
]
[[package]]
name = "heck"
version = "0.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea"
[[package]]
name = "hermit-abi"
version = "0.5.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fc0fef456e4baa96da950455cd02c081ca953b141298e41db3fc7e36b1da849c"
[[package]]
name = "hts-sys"
version = "2.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e38d7f1c121cd22aa214cb4dadd4277dc5447391eac518b899b29ba6356fbbb2"
dependencies = [
"bindgen",
"bzip2-sys",
"cc",
"curl-sys",
"fs-utils",
"glob",
"libz-sys",
"lzma-sys",
"openssl-sys",
]
[[package]]
name = "icu_collections"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "200072f5d0e3614556f94a9930d5dc3e0662a652823904c3a75dc3b0af7fee47"
dependencies = [
"displaydoc",
"potential_utf",
"yoke",
"zerofrom",
"zerovec",
]
[[package]]
name = "icu_locale_core"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0cde2700ccaed3872079a65fb1a78f6c0a36c91570f28755dda67bc8f7d9f00a"
dependencies = [
"displaydoc",
"litemap",
"tinystr 0.8.1",
"writeable",
"zerovec",
]
[[package]]
name = "icu_normalizer"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "436880e8e18df4d7bbc06d58432329d6458cc84531f7ac5f024e93deadb37979"
dependencies = [
"displaydoc",
"icu_collections",
"icu_normalizer_data",
"icu_properties",
"icu_provider",
"smallvec",
"zerovec",
]
[[package]]
name = "icu_normalizer_data"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "00210d6893afc98edb752b664b8890f0ef174c8adbb8d0be9710fa66fbbf72d3"
[[package]]
name = "icu_properties"
version = "2.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "016c619c1eeb94efb86809b015c58f479963de65bdb6253345c1a1276f22e32b"
dependencies = [
"displaydoc",
"icu_collections",
"icu_locale_core",
"icu_properties_data",
"icu_provider",
"potential_utf",
"zerotrie",
"zerovec",
]
[[package]]
name = "icu_properties_data"
version = "2.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "298459143998310acd25ffe6810ed544932242d3f07083eee1084d83a71bd632"
[[package]]
name = "icu_provider"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "03c80da27b5f4187909049ee2d72f276f0d9f99a42c306bd0131ecfe04d8e5af"
dependencies = [
"displaydoc",
"icu_locale_core",
"stable_deref_trait",
"tinystr 0.8.1",
"writeable",
"yoke",
"zerofrom",
"zerotrie",
"zerovec",
]
[[package]]
name = "idna"
version = "1.0.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "686f825264d630750a544639377bae737628043f20d38bbc029e8f29ea968a7e"
dependencies = [
"idna_adapter",
"smallvec",
"utf8_iter",
]
[[package]]
name = "idna_adapter"
version = "1.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3acae9609540aa318d1bc588455225fb2085b9ed0c4f6bd0d9d5bcd86f1a0344"
dependencies = [
"icu_normalizer",
"icu_properties",
]
[[package]]
name = "ieee754"
version = "0.2.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9007da9cacbd3e6343da136e98b0d2df013f553d35bdec8b518f07bea768e19c"
[[package]]
name = "is-terminal"
version = "0.4.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e04d7f318608d35d4b61ddd75cbdaee86b023ebe2bd5a66ee0915f0bf93095a9"
dependencies = [
"hermit-abi",
"libc",
"windows-sys",
]
[[package]]
name = "itertools"
version = "0.10.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b0fd2260e829bddf4cb6ea802289de2f86d6a7a690192fbe91b3f46e0f2c8473"
dependencies = [
"either",
]
[[package]]
name = "itoa"
version = "1.0.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4a5f13b858c8d314ee3e8f639011f7ccefe71f97f96e50151fb991f267928e2c"
[[package]]
name = "jobserver"
version = "0.1.33"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "38f262f097c174adebe41eb73d66ae9c06b2844fb0da69969647bbddd9b0538a"
dependencies = [
"getrandom 0.3.3",
"libc",
]
[[package]]
name = "js-sys"
version = "0.3.77"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1cfaf33c695fc6e08064efbc1f72ec937429614f25eef83af942d0e227c3a28f"
dependencies = [
"once_cell",
"wasm-bindgen",
]
[[package]]
name = "lazy_static"
version = "1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe"
[[package]]
name = "lazycell"
version = "1.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "830d08ce1d1d941e6b30645f1a0eb5643013d835ce3779a5fc208261dbe10f55"
[[package]]
name = "libc"
version = "0.2.174"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1171693293099992e19cddea4e8b849964e9846f4acee11b3948bcc337be8776"
[[package]]
name = "libloading"
version = "0.8.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "07033963ba89ebaf1584d767badaa2e8fcec21aedea6b8c0346d487d49c28667"
dependencies = [
"cfg-if",
"windows-targets",
]
[[package]]
name = "libz-sys"
version = "1.1.22"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8b70e7a7df205e92a1a4cd9aaae7898dac0aa555503cc0a649494d0d60e7651d"
dependencies = [
"cc",
"cmake",
"libc",
"pkg-config",
"vcpkg",
]
[[package]]
name = "linear-map"
version = "1.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bfae20f6b19ad527b550c223fddc3077a547fc70cda94b9b566575423fd303ee"
[[package]]
name = "litemap"
version = "0.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "241eaef5fd12c88705a01fc1066c48c4b36e0dd4377dcdc7ec3942cea7a69956"
[[package]]
name = "log"
version = "0.4.27"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "13dc2df351e3202783a1fe0d44375f7295ffb4049267b0f3018346dc122a1d94"
[[package]]
name = "lzma-sys"
version = "0.1.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5fda04ab3764e6cde78b9974eec4f779acaba7c4e84b36eca3cf77c581b85d27"
dependencies = [
"cc",
"libc",
"pkg-config",
]
[[package]]
name = "memchr"
version = "2.7.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32a282da65faaf38286cf3be983213fcf1d2e2a58700e808f83f4ea9a4804bc0"
[[package]]
name = "minimal-lexical"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "68354c5c6bd36d73ff3feceb05efa59b6acb7626617f4962be322a825e61f79a"
[[package]]
name = "newtype_derive"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac8cd24d9f185bb7223958d8c1ff7a961b74b1953fd05dba7cc568a63b3861ec"
dependencies = [
"rustc_version",
]
[[package]]
name = "nom"
version = "7.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d273983c5a657a70a3e8f2a01329822f3b8c8172b73826411a55751e404a0a4a"
dependencies = [
"memchr",
"minimal-lexical",
]
[[package]]
name = "num-traits"
version = "0.2.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "071dfc062690e90b734c0b2273ce72ad0ffa95f0c74596bc250dcfd960262841"
dependencies = [
"autocfg",
]
[[package]]
name = "once_cell"
version = "1.21.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "42f5e15c9953c5e4ccceeb2e7382a716482c34515315f7b03532b8b4e8393d2d"
[[package]]
name = "oorandom"
version = "11.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d6790f58c7ff633d8771f42965289203411a5e5c68388703c06e14f24770b41e"
[[package]]
name = "openssl-src"
version = "300.5.1+3.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "735230c832b28c000e3bc117119e6466a663ec73506bc0a9907ea4187508e42a"
dependencies = [
"cc",
]
[[package]]
name = "openssl-sys"
version = "0.9.109"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "90096e2e47630d78b7d1c20952dc621f957103f8bc2c8359ec81290d75238571"
dependencies = [
"cc",
"libc",
"openssl-src",
"pkg-config",
"vcpkg",
]
[[package]]
name = "percent-encoding"
version = "2.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e3148f5046208a5d56bcfc03053e3ca6334e51da8dfb19b6cdc8b306fae3283e"
[[package]]
name = "pkg-config"
version = "0.3.32"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7edddbd0b52d732b21ad9a5fab5c704c14cd949e5e9a1ec5929a24fded1b904c"
[[package]]
name = "plotters"
version = "0.3.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5aeb6f403d7a4911efb1e33402027fc44f29b5bf6def3effcc22d7bb75f2b747"
dependencies = [
"num-traits",
"plotters-backend",
"plotters-svg",
"wasm-bindgen",
"web-sys",
]
[[package]]
name = "plotters-backend"
version = "0.3.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "df42e13c12958a16b3f7f4386b9ab1f3e7933914ecea48da7139435263a4172a"
[[package]]
name = "plotters-svg"
version = "0.3.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "51bae2ac328883f7acdfea3d66a7c35751187f870bc81f94563733a154d7a670"
dependencies = [
"plotters-backend",
]
[[package]]
name = "potential_utf"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e5a7c30837279ca13e7c867e9e40053bc68740f988cb07f7ca6df43cc734b585"
dependencies = [
"zerovec",
]
[[package]]
name = "ppv-lite86"
version = "0.2.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "85eae3c4ed2f50dcfe72643da4befc30deadb458a9b590d720cde2f2b1e97da9"
dependencies = [
"zerocopy",
]
[[package]]
name = "proc-macro-error-attr2"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "96de42df36bb9bba5542fe9f1a054b8cc87e172759a1868aa05c1f3acc89dfc5"
dependencies = [
"proc-macro2",
"quote",
]
[[package]]
name = "proc-macro-error2"
version = "2.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "11ec05c52be0a07b08061f7dd003e7d7092e0472bc731b4af7bb1ef876109802"
dependencies = [
"proc-macro-error-attr2",
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "proc-macro2"
version = "1.0.95"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "02b3e5e68a3a1a02aad3ec490a98007cbc13c37cbe84a3cd7b8e406d76e7f778"
dependencies = [
"unicode-ident",
]
[[package]]
name = "quick-error"
version = "1.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a1d01941d82fa2ab50be1e79e6714289dd7cde78eba4c074bc5a4374f650dfe0"
[[package]]
name = "quote"
version = "1.0.40"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1885c039570dc00dcb4ff087a89e185fd56bae234ddc7f056a945bf36467248d"
dependencies = [
"proc-macro2",
]
[[package]]
name = "r-efi"
version = "5.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "69cdb34c158ceb288df11e18b4bd39de994f6657d83847bdffdbd7f346754b0f"
[[package]]
name = "rand"
version = "0.8.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "34af8d1a0e25924bc5b7c43c079c942339d8f0a8b57c39049bef581b46327404"
dependencies = [
"libc",
"rand_chacha",
"rand_core",
]
[[package]]
name = "rand_chacha"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6c10a63a0fa32252be49d21e7709d4d4baf8d231c2dbce1eaa8141b9b127d88"
dependencies = [
"ppv-lite86",
"rand_core",
]
[[package]]
name = "rand_core"
version = "0.6.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ec0be4795e2f6a28069bec0b5ff3e2ac9bafc99e6a9a7dc3547996c5c816922c"
dependencies = [
"getrandom 0.2.16",
]
[[package]]
name = "rayon"
version = "1.10.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b418a60154510ca1a002a752ca9714984e21e4241e804d32555251faf8b78ffa"
dependencies = [
"either",
"rayon-core",
]
[[package]]
name = "rayon-core"
version = "1.12.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1465873a3dfdaa8ae7cb14b4383657caab0b3e8a0aa9ae8e04b044854c8dfce2"
dependencies = [
"crossbeam-deque",
"crossbeam-utils",
]
[[package]]
name = "regex"
version = "1.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b544ef1b4eac5dc2db33ea63606ae9ffcfac26c1416a2806ae0bf5f56b201191"
dependencies = [
"aho-corasick",
"memchr",
"regex-automata",
"regex-syntax",
]
[[package]]
name = "regex-automata"
version = "0.4.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "809e8dc61f6de73b46c85f4c96486310fe304c434cfa43669d7b40f711150908"
dependencies = [
"aho-corasick",
"memchr",
"regex-syntax",
]
[[package]]
name = "regex-syntax"
version = "0.8.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b15c43186be67a4fd63bee50d0303afffcef381492ebe2c5d87f324e1b8815c"
[[package]]
name = "rust-htslib"
version = "0.50.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f7ec28c79f6b9ba90c45b33a519724708558dcaf73a3e37179586b8da9890630"
dependencies = [
"bio-types",
"byteorder",
"custom_derive",
"derive-new 0.7.0",
"hts-sys",
"ieee754",
"lazy_static",
"libc",
"libz-sys",
"linear-map",
"newtype_derive",
"regex",
"thiserror 2.0.12",
"url",
]
[[package]]
name = "rustc-hash"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2"
[[package]]
name = "rustc_version"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084"
dependencies = [
"semver",
]
[[package]]
name = "rustversion"
version = "1.0.21"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8a0d197bd2c9dc6e53b84da9556a69ba4cdfab8619eb41a8bd1cc2027a0f6b1d"
[[package]]
name = "ryu"
version = "1.0.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "28d3b2b1366ec20994f1fd18c3c594f05c5dd4bc44d8bb0c1c632c8d6829481f"
[[package]]
name = "same-file"
version = "1.0.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "93fc1dc3aaa9bfed95e02e6eadabb4baf7e3078b0bd1b4d7b6b0b68378900502"
dependencies = [
"winapi-util",
]
[[package]]
name = "semver"
version = "0.1.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac"
[[package]]
name = "serde"
version = "1.0.219"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5f0e2c6ed6606019b4e29e69dbaba95b11854410e5347d525002456dbbb786b6"
dependencies = [
"serde_derive",
]
[[package]]
name = "serde_derive"
version = "1.0.219"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5b0276cf7f2c73365f7157c8123c21cd9a50fbbd844757af28ca1f5925fc2a00"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "serde_json"
version = "1.0.142"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "030fedb782600dcbd6f02d479bf0d817ac3bb40d644745b769d6a96bc3afc5a7"
dependencies = [
"itoa",
"memchr",
"ryu",
"serde",
]
[[package]]
name = "shlex"
version = "1.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0fda2ff0d084019ba4d7c6f371c95d8fd75ce3524c3cb8fb653a3023f6323e64"
[[package]]
name = "smallvec"
version = "1.15.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "67b1b7a3b5fe4f1376887184045fcf45c69e92af734b7aaddc05fb777b6fbd03"
[[package]]
name = "stable_deref_trait"
version = "1.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a8f112729512f8e442d81f95a8a7ddf2b7c6b8a1a6f509a95864142b30cab2d3"
[[package]]
name = "strum_macros"
version = "0.26.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4c6bee85a5a24955dc440386795aa378cd9cf82acd5f764469152d2270e581be"
dependencies = [
"heck",
"proc-macro2",
"quote",
"rustversion",
"syn",
]
[[package]]
name = "syn"
version = "2.0.104"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "17b6f705963418cdb9927482fa304bc562ece2fdd4f616084c50b7023b435a40"
dependencies = [
"proc-macro2",
"quote",
"unicode-ident",
]
[[package]]
name = "synstructure"
version = "0.13.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "728a70f3dbaf5bab7f0c4b1ac8d7ae5ea60a4b5549c8a5914361c99147a709d2"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "thiserror"
version = "1.0.69"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b6aaf5339b578ea85b50e080feb250a3e8ae8cfcdff9a461c9ec2904bc923f52"
dependencies = [
"thiserror-impl 1.0.69",
]
[[package]]
name = "thiserror"
version = "2.0.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "567b8a2dae586314f7be2a752ec7474332959c6460e02bde30d702a66d488708"
dependencies = [
"thiserror-impl 2.0.12",
]
[[package]]
name = "thiserror-impl"
version = "1.0.69"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4fee6c4efc90059e10f81e6d42c60a18f76588c3d74cb83a0b242a2b6c7504c1"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "thiserror-impl"
version = "2.0.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7f7cf42b4507d8ea322120659672cf1b9dbb93f8f2d4ecfd6e51350ff5b17a1d"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "tinystr"
version = "0.7.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9117f5d4db391c1cf6927e7bea3db74b9a1c1add8f7eda9ffd5364f40f57b82f"
dependencies = [
"displaydoc",
]
[[package]]
name = "tinystr"
version = "0.8.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5d4f6d1145dcb577acf783d4e601bc1d76a13337bb54e6233add580b07344c8b"
dependencies = [
"displaydoc",
"zerovec",
]
[[package]]
name = "tinytemplate"
version = "1.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "be4d6b5f19ff7664e8c98d03e2139cb510db9b0a60b55f8e8709b689d939b6bc"
dependencies = [
"serde",
"serde_json",
]
[[package]]
name = "unicode-ident"
version = "1.0.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5a5f39404a5da50712a4c1eecf25e90dd62b613502b7e925fd4e4d19b5c96512"
[[package]]
name = "url"
version = "2.5.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32f8b686cadd1473f4bd0117a5d28d36b1ade384ea9b5069a1c40aefed7fda60"
dependencies = [
"form_urlencoded",
"idna",
"percent-encoding",
]
[[package]]
name = "utf8_iter"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b6c140620e7ffbb22c2dee59cafe6084a59b5ffc27a8859a5f0d494b5d52b6be"
[[package]]
name = "vcpkg"
version = "0.2.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "accd4ea62f7bb7a82fe23066fb0957d48ef677f6eeb8215f372f52e48bb32426"
[[package]]
name = "walkdir"
version = "2.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "29790946404f91d9c5d06f9874efddea1dc06c5efe94541a7d6863108e3a5e4b"
dependencies = [
"same-file",
"winapi-util",
]
[[package]]
name = "wasi"
version = "0.11.1+wasi-snapshot-preview1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ccf3ec651a847eb01de73ccad15eb7d99f80485de043efb2f370cd654f4ea44b"
[[package]]
name = "wasi"
version = "0.14.2+wasi-0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9683f9a5a998d873c0d21fcbe3c083009670149a8fab228644b8bd36b2c48cb3"
dependencies = [
"wit-bindgen-rt",
]
[[package]]
name = "wasm-bindgen"
version = "0.2.100"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1edc8929d7499fc4e8f0be2262a241556cfc54a0bea223790e71446f2aab1ef5"
dependencies = [
"cfg-if",
"once_cell",
"rustversion",
"wasm-bindgen-macro",
]
[[package]]
name = "wasm-bindgen-backend"
version = "0.2.100"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2f0a0651a5c2bc21487bde11ee802ccaf4c51935d0d3d42a6101f98161700bc6"
dependencies = [
"bumpalo",
"log",
"proc-macro2",
"quote",
"syn",
"wasm-bindgen-shared",
]
[[package]]
name = "wasm-bindgen-macro"
version = "0.2.100"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7fe63fc6d09ed3792bd0897b314f53de8e16568c2b3f7982f468c0bf9bd0b407"
dependencies = [
"quote",
"wasm-bindgen-macro-support",
]
[[package]]
name = "wasm-bindgen-macro-support"
version = "0.2.100"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8ae87ea40c9f689fc23f209965b6fb8a99ad69aeeb0231408be24920604395de"
dependencies = [
"proc-macro2",
"quote",
"syn",
"wasm-bindgen-backend",
"wasm-bindgen-shared",
]
[[package]]
name = "wasm-bindgen-shared"
version = "0.2.100"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1a05d73b933a847d6cccdda8f838a22ff101ad9bf93e33684f39c1f5f0eece3d"
dependencies = [
"unicode-ident",
]
[[package]]
name = "web-sys"
version = "0.3.77"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "33b6dd2ef9186f1f2072e409e99cd22a975331a6b3591b12c764e0e55c60d5d2"
dependencies = [
"js-sys",
"wasm-bindgen",
]
[[package]]
name = "winapi-util"
version = "0.1.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cf221c93e13a30d793f7645a0e7762c55d169dbb0a49671918a2319d289b10bb"
dependencies = [
"windows-sys",
]
[[package]]
name = "windows-sys"
version = "0.59.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1e38bc4d79ed67fd075bcc251a1c39b32a1776bbe92e5bef1f0bf1f8c531853b"
dependencies = [
"windows-targets",
]
[[package]]
name = "windows-targets"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973"
dependencies = [
"windows_aarch64_gnullvm",
"windows_aarch64_msvc",
"windows_i686_gnu",
"windows_i686_gnullvm",
"windows_i686_msvc",
"windows_x86_64_gnu",
"windows_x86_64_gnullvm",
"windows_x86_64_msvc",
]
[[package]]
name = "windows_aarch64_gnullvm"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3"
[[package]]
name = "windows_aarch64_msvc"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469"
[[package]]
name = "windows_i686_gnu"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b"
[[package]]
name = "windows_i686_gnullvm"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66"
[[package]]
name = "windows_i686_msvc"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66"
[[package]]
name = "windows_x86_64_gnu"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78"
[[package]]
name = "windows_x86_64_gnullvm"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
[[package]]
name = "windows_x86_64_msvc"
version = "0.52.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
[[package]]
name = "wit-bindgen-rt"
version = "0.39.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6f42320e61fe2cfd34354ecb597f86f413484a798ba44a8ca1165c58d42da6c1"
dependencies = [
"bitflags",
]
[[package]]
name = "writeable"
version = "0.6.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ea2f10b9bb0928dfb1b42b65e1f9e36f7f54dbdf08457afefb38afcdec4fa2bb"
[[package]]
name = "yoke"
version = "0.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5f41bb01b8226ef4bfd589436a297c53d118f65921786300e427be8d487695cc"
dependencies = [
"serde",
"stable_deref_trait",
"yoke-derive",
"zerofrom",
]
[[package]]
name = "yoke-derive"
version = "0.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "38da3c9736e16c5d3c8c597a9aaa5d1fa565d0532ae05e27c24aa62fb32c0ab6"
dependencies = [
"proc-macro2",
"quote",
"syn",
"synstructure",
]
[[package]]
name = "zerocopy"
version = "0.8.26"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1039dd0d3c310cf05de012d8a39ff557cb0d23087fd44cad61df08fc31907a2f"
dependencies = [
"zerocopy-derive",
]
[[package]]
name = "zerocopy-derive"
version = "0.8.26"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9ecf5b4cc5364572d7f4c329661bcc82724222973f2cab6f050a4e5c22f75181"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "zerofrom"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "50cc42e0333e05660c3587f3bf9d0478688e15d870fab3346451ce7f8c9fbea5"
dependencies = [
"zerofrom-derive",
]
[[package]]
name = "zerofrom-derive"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d71e5d6e06ab090c67b5e44993ec16b72dcbaabc526db883a360057678b48502"
dependencies = [
"proc-macro2",
"quote",
"syn",
"synstructure",
]
[[package]]
name = "zerotrie"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "36f0bbd478583f79edad978b407914f61b2972f5af6fa089686016be8f9af595"
dependencies = [
"displaydoc",
"yoke",
"zerofrom",
]
[[package]]
name = "zerovec"
version = "0.11.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bdbb9122ea75b11bf96e7492afb723e8a7fbe12c67417aa95e7e3d18144d37cd"
dependencies = [
"yoke",
"zerofrom",
"zerovec-derive",
]
[[package]]
name = "zerovec-derive"
version = "0.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5b96237efa0c878c64bd89c436f661be4e46b2f3eff1ebb976f7ef2321d2f58f"
dependencies = [
"proc-macro2",
"quote",
"syn",
]