[package]
name = "bedpull"
version = "0.1.1"
edition = "2024"
authors = ["James M. Ferguson <j.ferguson@garvan.org.au>"]
repository = "https://github.com/Psy-Fer/bedpull"
description = "bedpull - Pull the query sequence from bam or fasta references using a bed file"
keywords = ["bed", "bam", "bioinformatics"]
license = "MIT"
categories = ["science", "command-line-utilities"]
[dependencies]
clap = { version = "3.0", features = ["derive", "cargo", "wrap_help"] }
noodles = {version = "0.66.0", features = ["core", "bam", "sam", "bed", "fasta", "fastq"]}
bio = "1"
itertools = "0.11"
anyhow = "1.0"
csv = "1.3"