name: CI3
on:
push:
schedule:
- cron: '0 0 1 * *'
pull_request:
workflow_dispatch:
env:
CARGO_TERM_COLOR: always
permissions:
contents: read
jobs:
test_rust:
name: Test Rust
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, windows-latest, macos-13, macos-14]
runs-on: ${{ matrix.os }}
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Set up Rust (Pinned Version)
uses: dtolnay/rust-toolchain@1.81.0
with:
components: clippy, rustfmt, rust-src
- name: Run Clippy (strict for this pinned version of Rust)
run: cargo clippy --all-targets --all-features -- -D warnings
- name: Set up Rust (Latest Stable)
uses: dtolnay/rust-toolchain@stable
with:
components: clippy, rustfmt, rust-src
- name: Run Clippy (lenient for latest version)
run: cargo clippy --all-targets --all-features -- -A warnings || echo "Clippy warnings from the latest version"
- name: Test Rust no-default-features
run: cargo test --verbose --no-default-features
- name: Test Rust default features
run: cargo test --verbose
macos:
runs-on: macos-13
strategy:
matrix:
target: [x86_64, aarch64]
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: |
3.10
3.11
3.12
3.13
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.target }}
args: --release --out dist --find-interpreter
- name: Upload wheels
uses: actions/upload-artifact@v3
with:
name: wheels
path: dist
linux:
runs-on: ubuntu-latest
strategy:
matrix:
target: [x86_64, aarch64]
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: |
3.10
3.11
3.12
3.13
- name: Install cross-compilation dependencies
if: matrix.target == 'aarch64'
run: |
sudo apt-get update
sudo apt-get install -y gcc-aarch64-linux-gnu
- name: Build wheels for aarch64
if: matrix.target == 'aarch64'
env:
CC: aarch64-linux-gnu-gcc
CFLAGS: -march=armv8-a -D__ARM_ARCH=8
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.target }}
args: --release --out dist -i python3.10 -i python3.11 -i python3.12 -i python3.13
manylinux: auto
- name: Build wheels for x86_64
if: matrix.target == 'x86_64'
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.target }}
args: --release --out dist -i -i python3.10 -i python3.11 -i python3.12 -i python3.13
manylinux: auto
- name: Upload wheels
uses: actions/upload-artifact@v3
with:
name: wheels
path: dist
windows:
runs-on: windows-latest
strategy:
matrix:
target: [x64]
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: |
3.10
3.11
3.12
3.13
architecture: ${{ matrix.target }}
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.target }}
args: --release --out dist --find-interpreter
- name: Upload wheels
uses: actions/upload-artifact@v3
with:
name: wheels
path: dist
sdist:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Build sdist
uses: PyO3/maturin-action@v1
with:
command: sdist
args: --out dist
- name: Upload sdist
uses: actions/upload-artifact@v3
with:
name: wheels
path: dist
test_python:
name: Test Python
strategy:
fail-fast: false
matrix:
python-version: ["3.10", "3.11", "3.12", "3.13"]
os: [ubuntu-latest, windows-latest, macos-13, macos-14]
runs-on: ${{ matrix.os }}
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Install Rust
uses: actions-rs/toolchain@v1
with:
toolchain: stable
override: true
- name: Install the latest version of uv
uses: astral-sh/setup-uv@v3
- name: Install Python ${{ matrix.python-version }}
run: uv python install ${{ matrix.python-version }}
- name: Pinned Ruff
run: uvx ruff@0.6.9 check bed_reader
- name: Lastest Ruff (just to check for warnings)
run: uvx ruff@latest check bed_reader || echo "Ignoring warnings from the latest version of ruff"
- name: Install minimal dependencies
run: uv sync --extra min_dev
- name: Run min tests
shell: bash
run: |
if [[ "$RUNNER_OS" != "Windows" ]]; then
source .venv/bin/activate
else
source .venv/Scripts/activate
fi
pytest bed_reader/tests/test_opt_dep.py
- name: Install all dependencies
run: uv sync --all-extras
- name: Run all tests
shell: bash
run: |
if [[ "$RUNNER_OS" != "Windows" ]]; then
source .venv/bin/activate
else
source .venv/Scripts/activate
fi
pytest .