[package]
edition = "2021"
name = "bed-reader"
version = "1.1.1"
authors = ["FaST-LMM Team <fastlmm-dev@python.org>"]
build = "build.rs"
exclude = [
"**/tests/data/*",
"doc/build/*",
"docs/*",
"_static/*",
"target/*",
"**/target/debug/*",
"**/_static/fonts/*",
"**/_static/css/*",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Read and write the PLINK BED format, simply and efficiently."
homepage = "https://fastlmm.github.io/"
documentation = "https://docs.rs/bed-reader/latest/bed_reader/"
readme = "README-rust.md"
keywords = [
"bioinformatics",
"plink",
"genomics",
"genotype",
"snps",
]
categories = ["science"]
license = "Apache-2.0"
repository = "https://github.com/fastlmm/bed-reader"
[features]
default = ["tokio"]
extension-module = [
"pyo3/extension-module",
"tokio",
]
tokio = ["dep:tokio"]
[lib]
name = "bed_reader"
crate-type = [
"cdylib",
"rlib",
]
path = "src/lib.rs"
[[example]]
name = "cloud"
path = "examples/cloud.rs"
[[example]]
name = "no_cloud"
path = "examples/no_cloud.rs"
[[test]]
name = "tests_api"
path = "tests/tests_api.rs"
[[test]]
name = "tests_api_cloud"
path = "tests/tests_api_cloud.rs"
[dependencies.anyinput]
version = "0.1.8"
features = ["ndarray"]
[dependencies.bytecount]
version = "0.6.8"
[dependencies.byteorder]
version = "1.5.0"
default-features = false
[dependencies.bytes]
version = "1.11.1"
[dependencies.cloud-file]
version = "0.2.0"
[dependencies.derive_builder]
version = "0.20.2"
[dependencies.dpc-pariter]
version = "0.4.0"
[dependencies.fetch-data]
version = "0.2.0"
[dependencies.futures-util]
version = "0.3.31"
[dependencies.itertools]
version = "0.13.0"
[dependencies.ndarray]
version = "0.16.1"
features = [
"approx",
"rayon",
]
[dependencies.ndarray-npy]
version = "0.9.1"
default-features = false
[dependencies.num-traits]
version = "0.2.19"
[dependencies.numpy]
version = "0.28.0"
[dependencies.pyo3]
version = "0.28.3"
features = ["extension-module"]
optional = true
[dependencies.rayon]
version = "1.10.0"
[dependencies.statrs]
version = "0.17.1"
[dependencies.thiserror]
version = "1.0.66"
[dependencies.tokio]
version = "1.42.1"
features = ["full"]
optional = true
[dev-dependencies.anyhow]
version = "1.0.92"
[dev-dependencies.ndarray-rand]
version = "0.15.0"
[dev-dependencies.rusoto_credential]
version = "0.48.0"
[dev-dependencies.temp_testdir]
version = "0.2.3"
[dev-dependencies.thousands]
version = "0.2.0"
[build-dependencies.pyo3-build-config]
version = "0.28.3"