bed-reader 1.0.6-alpha.1

Read and write the PLINK BED format, simply and efficiently.
Documentation 
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[project]

name = "bed-reader"

readme = "README.md"

classifiers = [

    "Programming Language :: Python",

    "Programming Language :: Python :: 3.10",

    "Programming Language :: Python :: 3.11",

    "Programming Language :: Python :: 3.12",

    "Programming Language :: Python :: 3.13",

]

dependencies = ["numpy>=1.13.3"]



[project.optional-dependencies]

samples = ["pooch>=1.5.0"]

sparse = ["scipy>=1.4"]

dev = [

    "pytest",

    "pytest-cov",

    "pytest-doctestplus",

    "pytest-datadir",

    "limix-sphinx-theme>=0.0.4",

    "pytest-sphinx>=0.2.2",

    "sphinx>=6.2.1",

    "sphinx-autoapi>=3.0.0",

    "maturin>=1.5.0",

    "pandas>=0.25.1",

    "recommonmark>=0.7.1",

    "ruff>=0.1.0",

]

min_dev = ["numpy>=1.13.3", "pytest", "pytest-datadir"]



[project.urls]

homepage = "https://fastlmm.github.io"

source = "https://github.com/fastlmm/bed-reader"

bug-tracker = "https://github.com/fastlmm/bed-reader/issues"

documentation = "http://fastlmm.github.io/bed-reader"



[build-system]

requires = ["maturin>=1.5,<2.0"]

build-backend = "maturin"



[tool.maturin]

features = ["extension-module"]



[tool.ruff]

line-length = 120

exclude = [

    "*.ipynb",

    "doc/source/conf.py",

    "bed_reader/tests/benchmark/benchmark.py",

]



[tool.ruff.lint]

select = ["E", "F", "W"]





[tool.pytest.ini_options]

addopts = "--doctest-modules --doctest-glob=*.rst --doctest-glob=*.md"

doctest_optionflags = "ELLIPSIS"