bed-reader 1.0.2

Read and write the PLINK BED format, simply and efficiently.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74

# Useful


## Python


### install packages, compile Rust for Python


```bash
pip install -r requirements.txt
pip install -r requirements-dev.txt
maturin develop
```

### test


```bash
pytest bed_reader
pytest --doctest-modules bed_reader\_open_bed.py
pytest --doctest-modules README.md
pytest bed_reader/tests/test_open_bed_cloud.py::test_http_two -s
pytest bed_reader/tests/test_open_bed_cloud.py::test_http_cloud_urls_rst_1 -s
pytest --doctest-modules doc/index.rst

pytest --collect-only   # check test discovery
```

### generate doc


```bash
doc> make html & build\html\index.html
```

### create a local *.whl

```bash
maturin build --release
```

### Release to PyPi


```bash
cd doc
make.bat html
build\html\index.html
xcopy /c /e /s /h build\html ..\docs
# push changes

# download artifacts to .e.g. C:\Users\carlk\Downloads\wheels (25)

twine upload --repository testpypi bed_reader-1*
pip install --index-url https://test.pypi.org/simple/ "bed-reader"
pip uninstall bed-reader
# test with install tests, look at README and web pages

twine upload bed_reader-1*





## Rust


```bash
cargo doc --no-deps --open
cargo check

cargo test --doc supplemental_document_cloud_urls

cargo test --no-default-features
cargo test --all-features
cargo check --no-default-features
maturin develop
cargo publish --dry-run
```

## CMD


set PROMPT=$P$G