bascet 0.4.0

Bascet is a tool to preprocess single-cell data, handling barcode detection, trimming, QC, and managing the execution of custom tools for each cell
Documentation 
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use unix_named_pipe;


use std::path::PathBuf;

// Play ground for using named pipes



pub fn test(p: PathBuf) {




    unix_named_pipe::create(&p, None).expect("could not create fifo");


    // https://en.wikipedia.org/wiki/Named_pipe


    // mkfifo pipe


    /*
    
    //Pipe appears to reach end once writing process is done.
    //Reader and writer can be attached in any order

    Order is thus:

    1. Create the input pipes (R1, R2) and output (BAM) if we want to convert on-the-fly

    2. start BWA taking input, giving output

    3. start writer thread

    4. start reader thread

    5. wait for writer to finish
    6. wait for bwa to finish
    7. optional: wait for reader to finish
    
     */


     /*
     
     
     we can use pipes for some
     
     
     
      */

}