bamslice 0.1.6

Extract byte ranges from BAM files and convert to interleaved FASTQ format for parallel processing
Documentation 
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[[bin]]
name = "bamslice"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.clap]
features = ["derive"]
version = "4.5"

[dependencies.env_logger]
version = "0.11"

[dependencies.flate2]
version = "1.1.5"

[dependencies.log]
version = "0.4"

[dependencies.noodles]
features = ["bam", "bgzf", "sam"]
version = "0.102.0"

[dev-dependencies.criterion]
features = ["html_reports"]
version = "0.5"

[dev-dependencies.md5]
version = "0.7"

[lib]
name = "bamslice"
path = "src/lib.rs"

[lints.clippy.nursery]
level = "warn"
priority = 0

[lints.clippy.pedantic]
level = "warn"
priority = 0

[package]
authors = ["Bradley W. Langhorst <langhorst@neb.com>"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = false
categories = ["command-line-utilities", "science"]
description = "Extract byte ranges from BAM files and convert to interleaved FASTQ format for parallel processing"
edition = "2024"
exclude = ["tests/fixtures/*.bam", "tests/fixtures/*.sam", "tests/fixtures/*.fastq", "tests/fixtures/*.fq", ".github/", "benches/", "scripts", "Makefile", "flamegraph.svg"]
keywords = ["bam", "fastq", "bioinformatics", "parallel", "genomics"]
license = "AGPL-3.0"
name = "bamslice"
readme = "README.md"
repository = "https://github.com/nebiolabs/bamslice"
version = "0.1.6"

[package.metadata.edam]
data_inputs = ["data_0863"]
data_outputs = ["data_2044"]
formats_input = ["format_2572"]
formats_output = ["format_1930"]
operations = ["operation_3434", "operation_2409", "operation_3359"]
topics = ["topic_0091", "topic_3168"]

[[test]]
name = "integration_test"
path = "tests/integration_test.rs"