bam_tide 1.2.0

A fast and memory-efficient BAM processing toolkit for coverage calculation and quantification, designed as a scalable alternative to deeptools bamCoverage for large sequencing datasets. And additional BAM tools.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16

pub mod cli;
pub mod core;
pub mod bed_data;
pub mod data_iter;
pub mod compare_report;
pub mod subset_bam;


pub fn compute_io_threads(user_threads: usize) -> usize {
    user_threads
    /*match user_threads {
        0 | 1 => 1,
        2 => 1,
        _ => user_threads - 1,
    }*/
}