bam_tide 1.2.0

A fast and memory-efficient BAM processing toolkit for coverage calculation and quantification, designed as a scalable alternative to deeptools bamCoverage for large sequencing datasets. And additional BAM tools.
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "bam_tide"
version = "1.2.0"
authors = ["Stefan Lang"]
build = false
include = [
    "Cargo.toml",
    "Cargo.lock",
    "README.md",
    "LICENSE*",
    "src/**",
    "build.rs",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A fast and memory-efficient BAM processing toolkit for coverage calculation and quantification, designed as a scalable alternative to deeptools bamCoverage for large sequencing datasets. And additional BAM tools."
homepage = "https://github.com/stela2502/bam_tide"
documentation = "https://docs.rs/bam_tide"
readme = "README.md"
keywords = [
    "bioinformatics",
    "bam",
    "coverage",
    "bigwig",
    "ngs",
]
categories = [
    "science",
    "command-line-utilities",
]
license = "MIT"
repository = "https://github.com/stela2502/bam_tide"

[lib]
name = "bam_tide"
path = "src/lib.rs"

[[bin]]
name = "bam-coverage"
path = "src/bin/bam-coverage.rs"

[[bin]]
name = "bam-quant"
path = "src/bin/bam-quant.rs"

[[bin]]
name = "bam-subset-tag"
path = "src/bin/bam-subset-tag.rs"

[[bin]]
name = "bw-compare"
path = "src/bin/bw-compare.rs"

[dependencies.anyhow]
version = "1.0.100"

[dependencies.assert_cmd]
version = "2.1.2"

[dependencies.bigtools]
version = "0.5.6"

[dependencies.clap]
version = "4.5.56"
features = ["derive"]

[dependencies.gtf_splice_index]
version = "0.4.0"

[dependencies.int_to_str]
version = "0.1.0"
package = "stela-int-to-str"

[dependencies.mapping_info]
version = "0.1.0"

[dependencies.rayon]
version = "1.11.0"

[dependencies.rust-htslib]
version = "1.0.0"

[dependencies.scdata]
version = "0.1.0"

[dependencies.tokio]
version = "1.49.0"