automesh 0.3.9

Automatic mesh generation.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162

use super::{
    super::{
        Blocks, NSD,
        fem::py::{HexahedralFiniteElements, TetrahedralFiniteElements},
        py::{IntoFoo, PyIntermediateError},
    },
    Extraction, VoxelData, defeature_voxels, diff_voxels, extract_voxels,
    finite_element_data_from_data, voxel_data_from_npy, voxel_data_from_spn, write_voxels_to_npy,
    write_voxels_to_spn,
};
use pyo3::prelude::*;

pub fn register_module(parent_module: &Bound<'_, PyModule>) -> PyResult<()> {
    parent_module.add_class::<Voxels>()?;
    Ok(())
}

/// The voxels class.
#[pyclass]
pub struct Voxels {
    data: VoxelData,
    remove: Blocks,
    scale: [f64; NSD],
    translate: [f64; NSD],
}

#[pymethods]
impl Voxels {
    /// Converts the voxels to hexahedral finite elements.
    pub fn as_hexahedra(&self) -> Result<HexahedralFiniteElements, PyIntermediateError> {
        let (element_blocks, element_node_connectivity, nodal_coordinates) =
            finite_element_data_from_data(
                self.data.clone(),
                self.remove.clone().into(),
                self.scale.into(),
                self.translate.into(),
            );
        Ok(HexahedralFiniteElements::from_data(
            element_blocks,
            element_node_connectivity,
            nodal_coordinates.as_foo(),
        ))
    }
    /// Converts the voxels type into hexahedral finite elements.
    #[pyo3(signature = (remove=[].to_vec(), scale=[1.0, 1.0, 1.0], translate=[0.0, 0.0, 0.0]))]
    pub fn as_finite_elements(
        &self,
        remove: Blocks,
        scale: [f64; NSD],
        translate: [f64; NSD],
    ) -> Result<HexahedralFiniteElements, PyIntermediateError> {
        let (element_blocks, element_node_connectivity, nodal_coordinates) =
            finite_element_data_from_data(
                self.data.clone(),
                remove.into(),
                scale.into(),
                translate.into(),
            );
        Ok(HexahedralFiniteElements::from_data(
            element_blocks,
            element_node_connectivity,
            nodal_coordinates.as_foo(),
        ))
    }
    /// Converts the voxels type into tetrahedral finite elements.
    #[pyo3(signature = (remove=[].to_vec(), scale=[1.0, 1.0, 1.0], translate=[0.0, 0.0, 0.0]))]
    pub fn as_tetrahedra(
        &self,
        remove: Blocks,
        scale: [f64; NSD],
        translate: [f64; NSD],
    ) -> Result<TetrahedralFiniteElements, PyIntermediateError> {
        let (element_blocks, element_node_connectivity, nodal_coordinates) =
            finite_element_data_from_data(
                self.data.clone(),
                remove.into(),
                scale.into(),
                translate.into(),
            );
        Ok(TetrahedralFiniteElements::from_data(
            element_blocks,
            element_node_connectivity,
            nodal_coordinates.as_foo(),
        ))
    }
    /// Defeatures clusters with less than a minimum number of voxels.
    pub fn defeature(&mut self, min_num_voxels: usize) {
        self.data = defeature_voxels(
            min_num_voxels,
            super::Voxels {
                data: self.data.clone(),
                remove: self.remove.clone().into(),
                scale: self.scale.into(),
                translate: self.translate.into(),
            },
        )
        .get_data()
        .clone()
    }
    /// Shows the difference between two segmentations.
    pub fn diff(&self, voxels: &Self) -> Self {
        Self {
            data: diff_voxels(&self.data, &voxels.data),
            remove: vec![],
            scale: [1.0, 1.0, 1.0],
            translate: [0.0, 0.0, 0.0],
        }
    }
    /// Extract a specified range of voxels from the segmentation.
    pub fn extract(&mut self, extraction: [usize; 6]) {
        extract_voxels(
            &mut super::Voxels {
                data: self.data.clone(),
                remove: self.remove.clone().into(),
                scale: self.scale.into(),
                translate: self.translate.into(),
            },
            Extraction::from(extraction),
        )
    }
    /// Constructs and returns a new voxels type from an NPY file.
    #[staticmethod]
    #[pyo3(signature = (file_path, remove=[].to_vec(), scale=[1.0, 1.0, 1.0], translate=[0.0, 0.0, 0.0]))]
    pub fn from_npy(
        file_path: &str,
        remove: Blocks,
        scale: [f64; NSD],
        translate: [f64; NSD],
    ) -> Result<Self, PyIntermediateError> {
        Ok(Self {
            data: voxel_data_from_npy(file_path)?,
            remove,
            scale,
            translate,
        })
    }
    /// Constructs and returns a new voxels type from an SPN file.
    #[staticmethod]
    #[pyo3(signature = (file_path, nel, remove=[].to_vec(), scale=[1.0, 1.0, 1.0], translate=[0.0, 0.0, 0.0]))]
    pub fn from_spn(
        file_path: &str,
        nel: [usize; NSD],
        remove: Blocks,
        scale: [f64; NSD],
        translate: [f64; NSD],
    ) -> Result<Self, PyIntermediateError> {
        Ok(Self {
            data: voxel_data_from_spn(file_path, nel.into())?,
            remove,
            scale,
            translate,
        })
    }
    /// Writes the internal voxels data to an NPY file.
    pub fn write_npy(&self, file_path: &str) -> Result<(), PyIntermediateError> {
        Ok(write_voxels_to_npy(&self.data, file_path)?)
    }
    /// Writes the internal voxels data to an SPN file.
    pub fn write_spn(&self, file_path: &str) -> Result<(), PyIntermediateError> {
        Ok(write_voxels_to_spn(&self.data, file_path)?)
    }
}