atlas-bucket-map 3.0.0

atlas-bucket-map
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
#![allow(dead_code)]

use {
    crate::{
        bucket_storage::{BucketCapacity, BucketOccupied, BucketStorage, Capacity, IncludeHeader},
        RefCount,
    },
    bv::BitVec,
    modular_bitfield::prelude::*,
    num_enum::FromPrimitive,
    atlas_clock::Slot,
    atlas_pubkey::Pubkey,
    std::{fmt::Debug, marker::PhantomData},
};

/// in use/occupied
const OCCUPIED_OCCUPIED: u8 = 1;
/// free, ie. not occupied
const OCCUPIED_FREE: u8 = 0;

impl BucketCapacity for BucketWithHeader {
    fn capacity(&self) -> u64 {
        self.capacity_pow2.capacity()
    }
    fn capacity_pow2(&self) -> u8 {
        self.capacity_pow2.capacity_pow2()
    }
}

/// header for elements in a bucket
/// needs to be multiple of size_of::<u64>()
#[derive(Copy, Clone)]
#[repr(C)]
struct DataBucketRefCountOccupiedHeader {
    /// stores `ref_count` and
    /// occupied = OCCUPIED_OCCUPIED or OCCUPIED_FREE
    packed_ref_count: PackedRefCount,
}

#[derive(Debug, PartialEq)]
pub enum OccupyIfMatches {
    /// this entry is occupied and contains the same pubkey but with a different value, so this entry could not be updated
    FoundDuplicate,
    /// this entry was free and contains this pubkey and either value matched or the value was written to match
    SuccessfulInit,
    /// this entry had a different pubkey
    PubkeyMismatch,
}

/// allocated in `contents` in a BucketStorage
#[derive(Copy, Clone)]
#[repr(C)]
pub struct BucketWithHeader {
    capacity_pow2: Capacity,
}

impl BucketOccupied for BucketWithHeader {
    fn occupy(&mut self, element: &mut [u8], ix: usize) {
        assert!(self.is_free(element, ix));
        let entry = get_mut_from_bytes::<DataBucketRefCountOccupiedHeader>(element);
        entry.packed_ref_count.set_occupied(OCCUPIED_OCCUPIED);
    }
    fn free(&mut self, element: &mut [u8], ix: usize) {
        assert!(!self.is_free(element, ix));
        let entry = get_mut_from_bytes::<DataBucketRefCountOccupiedHeader>(element);
        entry.packed_ref_count.set_occupied(OCCUPIED_FREE);
    }
    fn is_free(&self, element: &[u8], _ix: usize) -> bool {
        let entry = get_from_bytes::<DataBucketRefCountOccupiedHeader>(element);
        entry.packed_ref_count.occupied() == OCCUPIED_FREE
    }
    fn offset_to_first_data() -> usize {
        std::mem::size_of::<DataBucketRefCountOccupiedHeader>()
    }
    fn new(capacity: Capacity) -> Self {
        assert!(matches!(capacity, Capacity::Pow2(_)));
        Self {
            capacity_pow2: capacity,
        }
    }
}

/// allocated in `contents` in a BucketStorage
#[derive(Debug)]
pub struct IndexBucketUsingBitVecBits<T: PartialEq + 'static> {
    /// 2 bits per entry that represent a 4 state enum tag
    pub enum_tag_first_bit: BitVec,
    /// second will be empty in all healthy cases because in real use, we only use enum values 0 and 2 (and we use the high bit for first)
    pub enum_tag_second_bit: BitVec,
    /// number of elements allocated
    capacity: u64,
    _phantom: PhantomData<&'static T>,
}

impl<T: Copy + PartialEq + 'static> IndexBucketUsingBitVecBits<T> {
    /// set the 2 bits (first and second) in `enum_tag`
    pub(crate) fn set_bits(&mut self, ix: u64, first: bool, second: bool) {
        self.enum_tag_first_bit.set(ix, first);
        if self.enum_tag_second_bit.is_empty() {
            if !second {
                // enum_tag_second_bit can remain empty.
                // The first time someone sets the second bit, we have to allocate and check it.
                return;
            }
            self.enum_tag_second_bit = BitVec::new_fill(false, self.capacity);
        }
        self.enum_tag_second_bit.set(ix, second);
    }
    /// get the 2 bits (first and second) in `enum_tag`
    fn get_bits(&self, ix: u64) -> (bool, bool) {
        (
            self.enum_tag_first_bit.get(ix),
            if self.enum_tag_second_bit.is_empty() {
                false
            } else {
                self.enum_tag_second_bit.get(ix)
            },
        )
    }
    /// turn the tag into bits and store them
    fn set_enum_tag(&mut self, ix: u64, value: OccupiedEnumTag) {
        let value = value as u8;
        self.set_bits(ix, (value & 2) == 2, (value & 1) == 1);
    }
    /// read the bits and convert them to an enum tag
    fn get_enum_tag(&self, ix: u64) -> OccupiedEnumTag {
        let (first, second) = self.get_bits(ix);
        let tag = (first as u8 * 2) + second as u8;
        num_enum::FromPrimitive::from_primitive(tag)
    }
}

impl<T: Copy + PartialEq + 'static> BucketOccupied for IndexBucketUsingBitVecBits<T> {
    fn occupy(&mut self, element: &mut [u8], ix: usize) {
        assert!(self.is_free(element, ix));
    }
    fn free(&mut self, element: &mut [u8], ix: usize) {
        assert!(!self.is_free(element, ix));
        self.set_enum_tag(ix as u64, OccupiedEnumTag::Free);
    }
    fn is_free(&self, _element: &[u8], ix: usize) -> bool {
        self.get_enum_tag(ix as u64) == OccupiedEnumTag::Free
    }
    fn offset_to_first_data() -> usize {
        // no header, nothing stored in data stream
        0
    }
    fn new(capacity: Capacity) -> Self {
        Self {
            // up to 2 bits per element
            // 1 bit per element in the ideal case, so don't allocate the 2nd bits until necessary
            enum_tag_first_bit: BitVec::new_fill(false, capacity.capacity()),
            enum_tag_second_bit: BitVec::new(),
            capacity: capacity.capacity(),
            _phantom: PhantomData,
        }
    }
    /// in this impl, the enum tag is stored in in-memory bit vec and there is more information than
    /// a single 'occupied' bit. So, this enum_tag needs to be copied over.
    fn copying_entry(
        &mut self,
        _element_new: &mut [u8],
        ix_new: usize,
        other: &Self,
        _element_old: &[u8],
        ix_old: usize,
    ) {
        self.set_enum_tag(ix_new as u64, other.get_enum_tag(ix_old as u64));
    }
}

impl<T: PartialEq> BucketCapacity for IndexBucketUsingBitVecBits<T> {
    fn capacity(&self) -> u64 {
        self.capacity
    }
}

pub type DataBucket = BucketWithHeader;
pub type IndexBucket<T> = IndexBucketUsingBitVecBits<T>;

/// contains the index of an entry in the index bucket.
/// This type allows us to call methods to interact with the index entry on this type.
pub struct IndexEntryPlaceInBucket<T: 'static> {
    pub ix: u64,
    _phantom: PhantomData<&'static T>,
}

#[repr(C)]
#[derive(Copy, Clone)]
/// one instance of this per item in the index
/// stored in the index bucket
pub struct IndexEntry<T: Clone + Copy> {
    pub(crate) key: Pubkey, // can this be smaller if we have reduced the keys into buckets already?
    /// depends on the contents of ref_count.slot_count_enum
    contents: SingleElementOrMultipleSlots<T>,
}

/// 63 bits available for ref count
pub(crate) const MAX_LEGAL_REFCOUNT: RefCount = RefCount::MAX >> 1;

/// hold a big `RefCount` while leaving room for extra bits to be used for things like 'Occupied'
#[bitfield(bits = 64)]
#[repr(C)]
#[derive(Debug, Default, Copy, Clone, Eq, PartialEq)]
pub(crate) struct PackedRefCount {
    /// whether this entry in the data file is occupied or not
    pub(crate) occupied: B1,
    /// ref_count of this entry. We don't need any where near 63 bits for this value
    pub(crate) ref_count: B63,
}

/// required fields when an index element references the data file
#[repr(C)]
#[derive(Debug, Default, Copy, Clone, Eq, PartialEq)]
pub(crate) struct MultipleSlots {
    // if the bucket doubled, the index can be recomputed using storage_cap_and_offset.create_bucket_capacity_pow2
    storage_cap_and_offset: PackedStorage,
    /// num elements in the slot list
    num_slots: Slot,
}

impl MultipleSlots {
    pub(crate) fn set_storage_capacity_when_created_pow2(
        &mut self,
        storage_capacity_when_created_pow2: u8,
    ) {
        self.storage_cap_and_offset
            .set_capacity_when_created_pow2(storage_capacity_when_created_pow2)
    }

    pub(crate) fn set_storage_offset(&mut self, storage_offset: u64) {
        self.storage_cap_and_offset
            .set_offset_checked(storage_offset)
            .expect("New storage offset must fit into 7 bytes!")
    }

    fn storage_capacity_when_created_pow2(&self) -> u8 {
        self.storage_cap_and_offset.capacity_when_created_pow2()
    }

    fn storage_offset(&self) -> u64 {
        self.storage_cap_and_offset.offset()
    }

    pub(crate) fn num_slots(&self) -> Slot {
        self.num_slots
    }

    pub(crate) fn set_num_slots(&mut self, num_slots: Slot) {
        self.num_slots = num_slots;
    }

    pub(crate) fn data_bucket_ix(&self) -> u64 {
        Self::data_bucket_from_num_slots(self.num_slots())
    }

    /// return closest bucket index fit for the slot slice.
    /// Since bucket size is 2^index, the return value is
    ///     min index, such that 2^index >= num_slots
    ///     index = ceiling(log2(num_slots))
    /// special case, when slot slice empty, return 0th index.
    pub(crate) fn data_bucket_from_num_slots(num_slots: Slot) -> u64 {
        // Compute the ceiling of log2 for integer
        if num_slots == 0 {
            0
        } else {
            (Slot::BITS - (num_slots - 1).leading_zeros()) as u64
        }
    }

    /// This function maps the original data location into an index in the current bucket storage.
    /// This is coupled with how we resize bucket storages.
    pub(crate) fn data_loc(&self, storage: &BucketStorage<DataBucket>) -> u64 {
        self.storage_offset()
            << (storage.contents.capacity_pow2() - self.storage_capacity_when_created_pow2())
    }

    /// ref_count is stored in the header per cell, in `packed_ref_count`
    pub fn set_ref_count(
        data_bucket: &mut BucketStorage<DataBucket>,
        data_ix: u64,
        ref_count: RefCount,
    ) {
        data_bucket
            .get_header_mut::<DataBucketRefCountOccupiedHeader>(data_ix)
            .packed_ref_count
            .set_ref_count(ref_count);
    }

    /// ref_count is stored in the header per cell, in `packed_ref_count`
    pub fn ref_count(data_bucket: &BucketStorage<DataBucket>, data_ix: u64) -> RefCount {
        data_bucket
            .get_header::<DataBucketRefCountOccupiedHeader>(data_ix)
            .packed_ref_count
            .ref_count()
    }
}

#[repr(C)]
#[derive(Copy, Clone)]
pub(crate) union SingleElementOrMultipleSlots<T: Clone + Copy> {
    /// the slot list contains a single element. No need for an entry in the data file.
    /// The element itself is stored in place in the index entry
    pub(crate) single_element: T,
    /// the slot list contains more than one element. This contains the reference to the data file.
    pub(crate) multiple_slots: MultipleSlots,
}

/// just the values for `OccupiedEnum`
/// This excludes the contents of any enum value.
#[derive(PartialEq, FromPrimitive, Debug)]
#[repr(u8)]
enum OccupiedEnumTag {
    #[default]
    Free = 0,
    ZeroSlots = 1,
    /// this should be value 2 so that we can store Free and OneSlotInIndex in only 1 bit. These are the primary states.
    OneSlotInIndex = 2,
    MultipleSlots = 3,
}

#[repr(u8)]
#[derive(Debug, Eq, PartialEq)]
pub(crate) enum OccupiedEnum<'a, T> {
    /// this spot is not occupied.
    /// ALL other enum values ARE occupied.
    Free = OccupiedEnumTag::Free as u8,
    /// zero slots in the slot list
    ZeroSlots = OccupiedEnumTag::ZeroSlots as u8,
    /// one slot in the slot list, it is stored in the index
    OneSlotInIndex(&'a T) = OccupiedEnumTag::OneSlotInIndex as u8,
    /// data is stored in data file
    MultipleSlots(&'a MultipleSlots) = OccupiedEnumTag::MultipleSlots as u8,
}

/// Pack the storage offset and capacity-when-created-pow2 fields into a single u64
#[bitfield(bits = 64)]
#[repr(C)]
#[derive(Debug, Default, Copy, Clone, Eq, PartialEq)]
struct PackedStorage {
    capacity_when_created_pow2: B8,
    offset: B56,
}

impl<T: Copy + PartialEq + 'static> IndexEntryPlaceInBucket<T> {
    pub(crate) fn get_slot_count_enum<'a>(
        &self,
        index_bucket: &'a BucketStorage<IndexBucket<T>>,
    ) -> OccupiedEnum<'a, T> {
        let enum_tag = index_bucket.contents.get_enum_tag(self.ix);
        let index_entry = index_bucket.get::<IndexEntry<T>>(self.ix);
        match enum_tag {
            OccupiedEnumTag::Free => OccupiedEnum::Free,
            OccupiedEnumTag::ZeroSlots => OccupiedEnum::ZeroSlots,
            OccupiedEnumTag::OneSlotInIndex => unsafe {
                OccupiedEnum::OneSlotInIndex(&index_entry.contents.single_element)
            },
            OccupiedEnumTag::MultipleSlots => unsafe {
                OccupiedEnum::MultipleSlots(&index_entry.contents.multiple_slots)
            },
        }
    }

    /// return Some(MultipleSlots) if this item's data is stored in the data file
    pub(crate) fn get_multiple_slots_mut<'a>(
        &self,
        index_bucket: &'a mut BucketStorage<IndexBucket<T>>,
    ) -> Option<&'a mut MultipleSlots> {
        let enum_tag = index_bucket.contents.get_enum_tag(self.ix);
        unsafe {
            match enum_tag {
                OccupiedEnumTag::MultipleSlots => {
                    let index_entry = index_bucket.get_mut::<IndexEntry<T>>(self.ix);
                    Some(&mut index_entry.contents.multiple_slots)
                }
                _ => None,
            }
        }
    }

    /// make this index entry reflect `value`
    pub(crate) fn set_slot_count_enum_value<'a>(
        &self,
        index_bucket: &'a mut BucketStorage<IndexBucket<T>>,
        value: OccupiedEnum<'a, T>,
    ) {
        let tag = match value {
            OccupiedEnum::Free => OccupiedEnumTag::Free,
            OccupiedEnum::ZeroSlots => OccupiedEnumTag::ZeroSlots,
            OccupiedEnum::OneSlotInIndex(single_element) => {
                let index_entry = index_bucket.get_mut::<IndexEntry<T>>(self.ix);
                index_entry.contents.single_element = *single_element;
                OccupiedEnumTag::OneSlotInIndex
            }
            OccupiedEnum::MultipleSlots(multiple_slots) => {
                let index_entry = index_bucket.get_mut::<IndexEntry<T>>(self.ix);
                index_entry.contents.multiple_slots = *multiple_slots;
                OccupiedEnumTag::MultipleSlots
            }
        };
        index_bucket.contents.set_enum_tag(self.ix, tag);
    }

    pub fn init(&self, index_bucket: &mut BucketStorage<IndexBucket<T>>, pubkey: &Pubkey) {
        let index_entry = index_bucket.get_mut::<IndexEntry<T>>(self.ix);
        index_entry.key = *pubkey;
    }

    /// If the entry matches the pubkey and is unoccupied, then store `data` here and occupy the entry.
    pub(crate) fn occupy_if_matches(
        &self,
        index_bucket: &mut BucketStorage<IndexBucket<T>>,
        data: &T,
        k: &Pubkey,
    ) -> OccupyIfMatches {
        let index_entry = index_bucket.get::<IndexEntry<T>>(self.ix);
        if &index_entry.key == k {
            let enum_tag = index_bucket.contents.get_enum_tag(self.ix);
            if unsafe { &index_entry.contents.single_element } == data {
                assert_eq!(
                    enum_tag,
                    OccupiedEnumTag::Free,
                    "index asked to insert the same data twice"
                );
                index_bucket
                    .contents
                    .set_enum_tag(self.ix, OccupiedEnumTag::OneSlotInIndex);
                OccupyIfMatches::SuccessfulInit
            } else if enum_tag == OccupiedEnumTag::Free {
                // pubkey is same, but value is different, so update value
                self.set_slot_count_enum_value(index_bucket, OccupiedEnum::OneSlotInIndex(data));
                OccupyIfMatches::SuccessfulInit
            } else {
                // found occupied duplicate of this pubkey
                OccupyIfMatches::FoundDuplicate
            }
        } else {
            OccupyIfMatches::PubkeyMismatch
        }
    }

    pub(crate) fn read_value<'a>(
        &self,
        index_bucket: &'a BucketStorage<IndexBucket<T>>,
        data_buckets: &'a [BucketStorage<DataBucket>],
    ) -> (&'a [T], RefCount) {
        let mut ref_count = 1;
        let slot_list = match self.get_slot_count_enum(index_bucket) {
            OccupiedEnum::ZeroSlots => {
                // num_slots is 0. This means empty slot list and ref_count=1
                &[]
            }
            OccupiedEnum::OneSlotInIndex(single_element) => {
                // only element is stored in the index entry
                std::slice::from_ref(single_element)
            }
            OccupiedEnum::MultipleSlots(multiple_slots) => {
                // slot list and ref_count are in data file
                let data_bucket_ix =
                    MultipleSlots::data_bucket_from_num_slots(multiple_slots.num_slots);
                let data_bucket = &data_buckets[data_bucket_ix as usize];
                let loc = multiple_slots.data_loc(data_bucket);
                assert!(!data_bucket.is_free(loc));

                ref_count = MultipleSlots::ref_count(data_bucket, loc);
                data_bucket.get_slice::<T>(loc, multiple_slots.num_slots, IncludeHeader::NoHeader)
            }
            _ => {
                panic!("trying to read data from a free entry");
            }
        };
        (slot_list, ref_count)
    }

    pub fn new(ix: u64) -> Self {
        Self {
            ix,
            _phantom: PhantomData,
        }
    }

    pub fn key<'a>(&self, index_bucket: &'a BucketStorage<IndexBucket<T>>) -> &'a Pubkey {
        let entry: &IndexEntry<T> = index_bucket.get(self.ix);
        &entry.key
    }
}

fn get_from_bytes<T>(item_slice: &[u8]) -> &T {
    debug_assert!(std::mem::size_of::<T>() <= item_slice.len());
    let item = item_slice.as_ptr().cast();
    debug_assert!(item as usize % std::mem::align_of::<T>() == 0);
    unsafe { &*item }
}

fn get_mut_from_bytes<T>(item_slice: &mut [u8]) -> &mut T {
    debug_assert!(std::mem::size_of::<T>() <= item_slice.len());
    let item = item_slice.as_mut_ptr().cast();
    debug_assert!(item as usize % std::mem::align_of::<T>() == 0);
    unsafe { &mut *item }
}

#[cfg(test)]
mod tests {
    use super::*;

    /// verify that accessors for storage_offset and capacity_when_created are
    /// correct and independent
    #[test]
    fn test_api() {
        for offset in [0, 1, u32::MAX as u64] {
            let mut multiple_slots = MultipleSlots::default();

            if offset != 0 {
                multiple_slots.set_storage_offset(offset);
            }
            assert_eq!(multiple_slots.storage_offset(), offset);
            assert_eq!(multiple_slots.storage_capacity_when_created_pow2(), 0);
            for pow in [1, 255, 0] {
                multiple_slots.set_storage_capacity_when_created_pow2(pow);
                assert_eq!(multiple_slots.storage_offset(), offset);
                assert_eq!(multiple_slots.storage_capacity_when_created_pow2(), pow);
            }
        }
    }

    #[test]
    fn test_size() {
        assert_eq!(std::mem::size_of::<PackedStorage>(), 1 + 7);
        assert_eq!(std::mem::size_of::<IndexEntry<u64>>(), 32 + 8 + 8);
    }

    #[test]
    #[should_panic(expected = "New storage offset must fit into 7 bytes!")]
    fn test_set_storage_offset_value_too_large() {
        let too_big = 1 << 56;
        let mut multiple_slots = MultipleSlots::default();
        multiple_slots.set_storage_offset(too_big);
    }

    #[test]
    fn test_data_bucket_from_num_slots() {
        for n in 0..512 {
            assert_eq!(
                MultipleSlots::data_bucket_from_num_slots(n),
                (n as f64).log2().ceil() as u64
            );
        }
        assert_eq!(
            MultipleSlots::data_bucket_from_num_slots(u32::MAX as u64),
            32
        );
        assert_eq!(
            MultipleSlots::data_bucket_from_num_slots(u32::MAX as u64 + 1),
            32
        );
        assert_eq!(
            MultipleSlots::data_bucket_from_num_slots(u32::MAX as u64 + 2),
            33
        );
    }
}