Enum AminoAcid

pub enum AminoAcid {
    Ter,
    A,
    C,
    D,
    E,
    F,
    G,
    H,
    I,
    K,
    L,
    M,
    N,
    P,
    Q,
    R,
    S,
    T,
    V,
    W,
    Y,
}

Enum of all standard amino acids

Use the single-letter code to create AminoAcid instances, except for the Termination codon, wich uses Ter

Examples

use atglib::models::AminoAcid;

// derive from `slice`
assert_eq!(AminoAcid::M, AminoAcid::try_from("Met").unwrap());
assert_eq!(AminoAcid::M, AminoAcid::try_from("M").unwrap());

// derive from `char`
assert_eq!(AminoAcid::Ter, AminoAcid::try_from('*').unwrap());

// the `Display` and `as_ref` traits return the three letter code
assert_eq!(format!("{}", AminoAcid::A), "Ala".to_string());

assert_eq!(AminoAcid::A.as_ref(), "Ala".to_string());

// Get the single-letter code
assert_eq!(AminoAcid::A.single_letter(), 'A');

Variants

Ter

A

C

D

E

F

G

H

I

K

L

M

N

P

Q

R

S

T

V

W

Y

Implementations

impl AminoAcid

pub fn single_letter(&self) -> char

Returns the single-letter code of the AminoAcid

Examples

use atglib::models::AminoAcid;
let aa = AminoAcid::M;
assert_eq!(aa.single_letter(), 'M');

Trait Implementations

impl AsRef<str> for AminoAcid

fn as_ref(&self) -> &str

Converts this type into a shared reference of the (usually inferred) input type.

impl Clone for AminoAcid

fn clone(&self) -> AminoAcid

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for AminoAcid

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for AminoAcid

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for AminoAcid

fn eq(&self, other: &AminoAcid) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl TryFrom<&str> for AminoAcid

type Error = AtgError

The type returned in the event of a conversion error.

fn try_from(s: &str) -> Result<AminoAcid, AtgError>

Performs the conversion.

impl TryFrom<char> for AminoAcid

type Error = AtgError

The type returned in the event of a conversion error.

fn try_from(s: char) -> Result<AminoAcid, AtgError>

Performs the conversion.

impl Copy for AminoAcid

impl Eq for AminoAcid

impl StructuralPartialEq for AminoAcid