atglib 0.2.0

use std::fs::File;
use std::io::{BufWriter, Write};
use std::path::Path;

use crate::bed::BedLine;
use crate::models::{Transcript, TranscriptWrite};
use crate::utils::errors::ParseBedError;
use crate::utils::errors::ReadWriteError;

/// Writes [`Transcript`]s into a `BufWriter`
///
/// # Examples
///
/// ```rust
/// use std::io;
/// use atglib::tests;;
/// use atglib::bed::Writer;
/// use atglib::models::TranscriptWrite;
///
/// let transcripts = vec![tests::transcripts::standard_transcript()];
///
/// let output = Vec::new(); // substitute this with proper IO (io::stdout())
/// let mut writer = Writer::new(output);
/// writer.write_transcript_vec(&transcripts);
///
/// let written_output = String::from_utf8(writer.into_inner().unwrap()).unwrap();
/// assert_eq!(written_output.starts_with("chr1\t"), true);
/// ```
pub struct Writer<W: std::io::Write> {
    inner: BufWriter<W>,
}

impl Writer<File> {
    pub fn from_file<P: AsRef<Path>>(path: P) -> Result<Self, ReadWriteError> {
        match File::create(path.as_ref()) {
            Ok(file) => Ok(Self::new(file)),
            Err(err) => Err(ReadWriteError::new(err)),
        }
    }
}

impl<W: std::io::Write> Writer<W> {
    /// Creates a new generic Writer for any `std::io::Read`` object
    ///
    /// Use this method when you want to write to stdout or
    /// a remote source, e.g. via HTTP
    pub fn new(writer: W) -> Self {
        Writer {
            inner: BufWriter::new(writer),
        }
    }

    pub fn with_capacity(capacity: usize, writer: W) -> Self {
        Writer {
            inner: BufWriter::with_capacity(capacity, writer),
        }
    }

    pub fn flush(&mut self) -> Result<(), ParseBedError> {
        match self.inner.flush() {
            Ok(res) => Ok(res),
            Err(err) => Err(ParseBedError::from(err.to_string())),
        }
    }

    pub fn into_inner(self) -> Result<W, ParseBedError> {
        match self.inner.into_inner() {
            Ok(res) => Ok(res),
            Err(err) => Err(ParseBedError::from(err.to_string())),
        }
    }
}

impl<W: std::io::Write> TranscriptWrite for Writer<W> {
    /// Writes a single transcript formatted as RefGene with an extra newline
    ///
    /// This method adds an extra newline at the end of the row
    /// to allow writing multiple transcripts continuosly
    fn writeln_single_transcript(&mut self, transcript: &Transcript) -> Result<(), std::io::Error> {
        self.write_single_transcript(transcript)?;
        self.inner.write_all("\n".as_bytes())
    }

    fn write_single_transcript(&mut self, transcript: &Transcript) -> Result<(), std::io::Error> {
        self.inner
            .write_all(BedLine::from(transcript).to_string().as_bytes())
    }
}