atg 0.3.0

A utility to handle transcripts for genomics and transcriptomics
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53

#!/bin/bash

VERSION=$1

confirmation() {
    read confirm
    if [ "$confirm" != "y" ]
    then
      echo "Aborting";
      exit 1
    fi
}

echo -ne "Preparing for release ${VERSION}. Is this correct? [y/n] "
confirmation

echo "Creating release branch"
git checkout main && \
git pull && \
git checkout -b release/${VERSION} && \
git push -u origin release/${VERSION}

echo -ne "Did you finish merging all features into 'release/${VERSION}'? [y/n] "
confirmation
git checkout release/${VERSION} && git pull

echo "Running linter and unittests"
cargo clippy && \
cargo fmt && \
cargo test

echo "Updating version number"
sed -i .bck "s/^version =.*$/version = \"${VERSION}\"/" ./Cargo.toml
cargo build

git commit -am "Release ${VERSION}"
git tag ${VERSION}
git push --follow-tags

echo -ne "Do you want to build the binaries now? [y/n] "
confirmation
cargo build --release --target=aarch64-apple-darwin
cp target/aarch64-apple-darwin/release/atg target/atg-${VERSION}-aarch64-apple-darwin
cargo build --release --target=x86_64-unknown-linux-gnu
cp target/x86_64-unknown-linux-gnu/release/atg target/atg-${VERSION}-x86_64-unknown-linux-gnu
cargo build --release --target=x86_64-unknown-linux-musl
cp target/x86_64-unknown-linux-musl/release/atg target/atg-${VERSION}-x86_64-unknown-linux-musl

echo "You can now merge release/${VERSION} into main, create a new release and upload the binaries"

echo -ne "Do you want to publish atg to crates.io now? [y/n] "
confirmation
cargo publish