arrow-avro 58.3.0

Support for parsing Avro format into the Arrow format
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
// Licensed to the Apache Software Foundation (ASF) under one
// or more contributor license agreements.  See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership.  The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License.  You may obtain a copy of the License at
//
//   http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing,
// software distributed under the License is distributed on an
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, either express or implied.  See the License for the
// specific language governing permissions and limitations
// under the License.

//! Decoder for [`Header`]

use crate::compression::{CODEC_METADATA_KEY, CompressionCodec};
use crate::errors::AvroError;
use crate::reader::vlq::VLQDecoder;
use crate::schema::{AvroSchema, SCHEMA_METADATA_KEY, Schema};
use std::io::BufRead;
use std::str;
use std::sync::Arc;

/// Read the Avro file header (magic, metadata, sync marker) from `reader`.
///
/// On success, returns the parsed [`Header`] and the number of bytes read from `reader`.
pub(crate) fn read_header<R: BufRead>(mut reader: R) -> Result<(Header, u64), AvroError> {
    let mut decoder = HeaderDecoder::default();
    let mut position = 0;
    loop {
        let buf = reader.fill_buf()?;
        if buf.is_empty() {
            break;
        }
        let read = buf.len();
        let decoded = decoder.decode(buf)?;
        reader.consume(decoded);
        position += decoded as u64;
        if decoded != read {
            break;
        }
    }
    decoder
        .flush()
        .map(|header| (header, position))
        .ok_or_else(|| AvroError::EOF("Unexpected EOF while reading Avro header".to_string()))
}

#[derive(Debug)]
enum HeaderDecoderState {
    /// Decoding the [`MAGIC`] prefix
    Magic,
    /// Decoding a block count
    BlockCount,
    /// Decoding a block byte length
    BlockLen,
    /// Decoding a key length
    KeyLen,
    /// Decoding a key string
    Key,
    /// Decoding a value length
    ValueLen,
    /// Decoding a value payload
    Value,
    /// Decoding sync marker
    Sync,
    /// Finished decoding
    Finished,
}

/// A decoded header for an [Object Container File](https://avro.apache.org/docs/1.11.1/specification/#object-container-files)
#[derive(Debug, Clone)]
pub struct Header {
    meta_offsets: Vec<usize>,
    meta_buf: Vec<u8>,
    sync: [u8; 16],
}

impl Header {
    /// Returns an iterator over the meta keys in this header
    pub fn metadata(&self) -> impl Iterator<Item = (&[u8], &[u8])> {
        let mut last = 0;
        self.meta_offsets.chunks_exact(2).map(move |w| {
            let start = last;
            last = w[1];
            (&self.meta_buf[start..w[0]], &self.meta_buf[w[0]..w[1]])
        })
    }

    /// Returns the value for a given metadata key if present
    pub fn get(&self, key: impl AsRef<[u8]>) -> Option<&[u8]> {
        self.metadata()
            .find_map(|(k, v)| (k == key.as_ref()).then_some(v))
    }

    /// Returns the sync token for this file
    pub fn sync(&self) -> [u8; 16] {
        self.sync
    }

    /// Returns the [`CompressionCodec`] if any
    pub fn compression(&self) -> Result<Option<CompressionCodec>, AvroError> {
        let v = self.get(CODEC_METADATA_KEY);
        match v {
            None | Some(b"null") => Ok(None),
            Some(b"deflate") => Ok(Some(CompressionCodec::Deflate)),
            Some(b"snappy") => Ok(Some(CompressionCodec::Snappy)),
            Some(b"zstandard") => Ok(Some(CompressionCodec::ZStandard)),
            Some(b"bzip2") => Ok(Some(CompressionCodec::Bzip2)),
            Some(b"xz") => Ok(Some(CompressionCodec::Xz)),
            Some(v) => Err(AvroError::ParseError(format!(
                "Unrecognized compression codec \'{}\'",
                String::from_utf8_lossy(v)
            ))),
        }
    }

    /// Returns the `Schema` if any
    pub(crate) fn schema(&self) -> Result<Option<Schema<'_>>, AvroError> {
        self.get(SCHEMA_METADATA_KEY)
            .map(|x| {
                serde_json::from_slice(x).map_err(|e| {
                    AvroError::ParseError(format!("Failed to parse Avro schema JSON: {e}"))
                })
            })
            .transpose()
    }
}

/// Header information for an Avro OCF file.
///
/// The header can be parsed once and shared to construct multiple readers
/// for the same file, and so this struct is designed to be cheaply clonable.
#[derive(Clone)]
pub struct HeaderInfo(Arc<HeaderInfoInner>);

struct HeaderInfoInner {
    header: Header,
    header_len: u64,
}

/// Reads the Avro file header (magic, metadata, sync marker) from `reader`.
///
/// On success, returns the parsed [`HeaderInfo`] containing the header and its length in bytes.
pub fn read_header_info<R: BufRead>(reader: R) -> Result<HeaderInfo, AvroError> {
    let (header, header_len) = read_header(reader)?;
    Ok(HeaderInfo::new(header, header_len))
}

impl HeaderInfo {
    pub(crate) fn new(header: Header, header_len: u64) -> Self {
        Self(Arc::new(HeaderInfoInner { header, header_len }))
    }

    /// Returns the writer schema for this file.
    pub fn writer_schema(&self) -> Result<AvroSchema, AvroError> {
        let raw = self.0.header.get(SCHEMA_METADATA_KEY).ok_or_else(|| {
            AvroError::ParseError("No Avro schema present in file header".to_string())
        })?;
        let json_string = str::from_utf8(raw)
            .map_err(|e| {
                AvroError::ParseError(format!("Invalid UTF-8 in Avro schema header: {e}"))
            })?
            .to_string();
        Ok(AvroSchema::new(json_string))
    }

    /// Returns the [`CompressionCodec`] if any
    pub fn compression(&self) -> Result<Option<CompressionCodec>, AvroError> {
        self.0.header.compression()
    }

    /// Returns the length of the header in bytes.
    pub fn header_len(&self) -> u64 {
        self.0.header_len
    }

    /// Returns the sync token for this file.
    pub fn sync(&self) -> [u8; 16] {
        self.0.header.sync()
    }
}

/// A decoder for [`Header`]
///
/// The avro file format does not encode the length of the header, and so it
/// is necessary to provide a push-based decoder that can be used with streams
#[derive(Debug)]
pub struct HeaderDecoder {
    state: HeaderDecoderState,
    vlq_decoder: VLQDecoder,

    /// The end offsets of strings in `meta_buf`
    meta_offsets: Vec<usize>,
    /// The raw binary data of the metadata map
    meta_buf: Vec<u8>,

    /// The decoded sync marker
    sync_marker: [u8; 16],

    /// The number of remaining tuples in the current block
    tuples_remaining: usize,
    /// The number of bytes remaining in the current string/bytes payload
    bytes_remaining: usize,
}

impl Default for HeaderDecoder {
    fn default() -> Self {
        Self {
            state: HeaderDecoderState::Magic,
            meta_offsets: vec![],
            meta_buf: vec![],
            sync_marker: [0; 16],
            vlq_decoder: Default::default(),
            tuples_remaining: 0,
            bytes_remaining: MAGIC.len(),
        }
    }
}

const MAGIC: &[u8; 4] = b"Obj\x01";

impl HeaderDecoder {
    /// Parse [`Header`] from `buf`, returning the number of bytes read
    ///
    /// This method can be called multiple times with consecutive chunks of data, allowing
    /// integration with chunked IO systems like [`BufRead::fill_buf`]
    ///
    /// All errors should be considered fatal, and decoding aborted
    ///
    /// Once the entire [`Header`] has been decoded this method will not read any further
    /// input bytes, and the header can be obtained with [`Self::flush`]
    ///
    /// [`BufRead::fill_buf`]: std::io::BufRead::fill_buf
    pub fn decode(&mut self, mut buf: &[u8]) -> Result<usize, AvroError> {
        let max_read = buf.len();
        while !buf.is_empty() {
            match self.state {
                HeaderDecoderState::Magic => {
                    let remaining = &MAGIC[MAGIC.len() - self.bytes_remaining..];
                    let to_decode = buf.len().min(remaining.len());
                    if !buf.starts_with(&remaining[..to_decode]) {
                        return Err(AvroError::ParseError("Incorrect avro magic".to_string()));
                    }
                    self.bytes_remaining -= to_decode;
                    buf = &buf[to_decode..];
                    if self.bytes_remaining == 0 {
                        self.state = HeaderDecoderState::BlockCount;
                    }
                }
                HeaderDecoderState::BlockCount => {
                    if let Some(block_count) = self.vlq_decoder.long(&mut buf) {
                        match block_count.try_into() {
                            Ok(0) => {
                                self.state = HeaderDecoderState::Sync;
                                self.bytes_remaining = 16;
                            }
                            Ok(remaining) => {
                                self.tuples_remaining = remaining;
                                self.state = HeaderDecoderState::KeyLen;
                            }
                            Err(_) => {
                                self.tuples_remaining = block_count.unsigned_abs() as _;
                                self.state = HeaderDecoderState::BlockLen;
                            }
                        }
                    }
                }
                HeaderDecoderState::BlockLen => {
                    if self.vlq_decoder.long(&mut buf).is_some() {
                        self.state = HeaderDecoderState::KeyLen
                    }
                }
                HeaderDecoderState::Key => {
                    let to_read = self.bytes_remaining.min(buf.len());
                    self.meta_buf.extend_from_slice(&buf[..to_read]);
                    self.bytes_remaining -= to_read;
                    buf = &buf[to_read..];
                    if self.bytes_remaining == 0 {
                        self.meta_offsets.push(self.meta_buf.len());
                        self.state = HeaderDecoderState::ValueLen;
                    }
                }
                HeaderDecoderState::Value => {
                    let to_read = self.bytes_remaining.min(buf.len());
                    self.meta_buf.extend_from_slice(&buf[..to_read]);
                    self.bytes_remaining -= to_read;
                    buf = &buf[to_read..];
                    if self.bytes_remaining == 0 {
                        self.meta_offsets.push(self.meta_buf.len());

                        self.tuples_remaining -= 1;
                        match self.tuples_remaining {
                            0 => self.state = HeaderDecoderState::BlockCount,
                            _ => self.state = HeaderDecoderState::KeyLen,
                        }
                    }
                }
                HeaderDecoderState::KeyLen => {
                    if let Some(len) = self.vlq_decoder.long(&mut buf) {
                        self.bytes_remaining = len as _;
                        self.state = HeaderDecoderState::Key;
                    }
                }
                HeaderDecoderState::ValueLen => {
                    if let Some(len) = self.vlq_decoder.long(&mut buf) {
                        self.bytes_remaining = len as _;
                        self.state = HeaderDecoderState::Value;
                    }
                }
                HeaderDecoderState::Sync => {
                    let to_decode = buf.len().min(self.bytes_remaining);
                    let write = &mut self.sync_marker[16 - to_decode..];
                    write[..to_decode].copy_from_slice(&buf[..to_decode]);
                    self.bytes_remaining -= to_decode;
                    buf = &buf[to_decode..];
                    if self.bytes_remaining == 0 {
                        self.state = HeaderDecoderState::Finished;
                    }
                }
                HeaderDecoderState::Finished => return Ok(max_read - buf.len()),
            }
        }
        Ok(max_read)
    }

    /// Flush this decoder returning the parsed [`Header`] if any
    pub fn flush(&mut self) -> Option<Header> {
        match self.state {
            HeaderDecoderState::Finished => {
                self.state = HeaderDecoderState::Magic;
                Some(Header {
                    meta_offsets: std::mem::take(&mut self.meta_offsets),
                    meta_buf: std::mem::take(&mut self.meta_buf),
                    sync: self.sync_marker,
                })
            }
            _ => None,
        }
    }
}

#[cfg(test)]
mod test {
    use super::*;
    use crate::codec::AvroField;
    use crate::reader::read_header;
    use crate::schema::{
        AVRO_NAME_METADATA_KEY, AVRO_ROOT_RECORD_DEFAULT_NAME, SCHEMA_METADATA_KEY,
    };
    use crate::test_util::arrow_test_data;
    use arrow_schema::{DataType, Field, Fields, TimeUnit};
    use std::collections::HashMap;
    use std::fs::File;
    use std::io::BufReader;

    #[test]
    fn test_header_decode() {
        let mut decoder = HeaderDecoder::default();
        for m in MAGIC {
            decoder.decode(std::slice::from_ref(m)).unwrap();
        }

        let mut decoder = HeaderDecoder::default();
        assert_eq!(decoder.decode(MAGIC).unwrap(), 4);

        let mut decoder = HeaderDecoder::default();
        decoder.decode(b"Ob").unwrap();
        let err = decoder.decode(b"s").unwrap_err().to_string();
        assert_eq!(err, "Parser error: Incorrect avro magic");
    }

    fn decode_file(file: &str) -> Header {
        let file = File::open(file).unwrap();
        read_header(BufReader::with_capacity(1000, file)).unwrap().0
    }

    #[test]
    fn test_header() {
        let header = decode_file(&arrow_test_data("avro/alltypes_plain.avro"));
        let schema_json = header.get(SCHEMA_METADATA_KEY).unwrap();
        let expected = br#"{"type":"record","name":"topLevelRecord","fields":[{"name":"id","type":["int","null"]},{"name":"bool_col","type":["boolean","null"]},{"name":"tinyint_col","type":["int","null"]},{"name":"smallint_col","type":["int","null"]},{"name":"int_col","type":["int","null"]},{"name":"bigint_col","type":["long","null"]},{"name":"float_col","type":["float","null"]},{"name":"double_col","type":["double","null"]},{"name":"date_string_col","type":["bytes","null"]},{"name":"string_col","type":["bytes","null"]},{"name":"timestamp_col","type":[{"type":"long","logicalType":"timestamp-micros"},"null"]}]}"#;
        assert_eq!(schema_json, expected);
        let schema: Schema<'_> = serde_json::from_slice(schema_json).unwrap();
        let field = AvroField::try_from(&schema).unwrap();

        assert_eq!(
            field.field(),
            Field::new(
                "topLevelRecord",
                DataType::Struct(Fields::from(vec![
                    Field::new("id", DataType::Int32, true),
                    Field::new("bool_col", DataType::Boolean, true),
                    Field::new("tinyint_col", DataType::Int32, true),
                    Field::new("smallint_col", DataType::Int32, true),
                    Field::new("int_col", DataType::Int32, true),
                    Field::new("bigint_col", DataType::Int64, true),
                    Field::new("float_col", DataType::Float32, true),
                    Field::new("double_col", DataType::Float64, true),
                    Field::new("date_string_col", DataType::Binary, true),
                    Field::new("string_col", DataType::Binary, true),
                    Field::new(
                        "timestamp_col",
                        DataType::Timestamp(TimeUnit::Microsecond, Some("+00:00".into())),
                        true
                    ),
                ])),
                false
            )
            .with_metadata(HashMap::from([(
                AVRO_NAME_METADATA_KEY.to_string(),
                AVRO_ROOT_RECORD_DEFAULT_NAME.to_string()
            )]))
        );

        assert_eq!(
            u128::from_le_bytes(header.sync()),
            226966037233754408753420635932530907102
        );

        let header = decode_file(&arrow_test_data("avro/fixed_length_decimal.avro"));

        let meta: Vec<_> = header
            .metadata()
            .map(|(k, _)| std::str::from_utf8(k).unwrap())
            .collect();

        assert_eq!(
            meta,
            &["avro.schema", "org.apache.spark.version", "avro.codec"]
        );

        let schema_json = header.get(SCHEMA_METADATA_KEY).unwrap();
        let expected = br#"{"type":"record","name":"topLevelRecord","fields":[{"name":"value","type":[{"type":"fixed","name":"fixed","namespace":"topLevelRecord.value","size":11,"logicalType":"decimal","precision":25,"scale":2},"null"]}]}"#;
        assert_eq!(schema_json, expected);
        let _schema: Schema<'_> = serde_json::from_slice(schema_json).unwrap();
        assert_eq!(
            u128::from_le_bytes(header.sync()),
            325166208089902833952788552656412487328
        );
    }
}