AlignfoldScores

consprob_trained

Struct AlignfoldScores 

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pub struct AlignfoldScores {
Show 31 fields
    pub hairpin_scores_len: HairpinScoresLen,
    pub bulge_scores_len: BulgeScoresLen,
    pub interior_scores_len: InteriorScoresLen,
    pub interior_scores_symmetric: InteriorScoresSymmetric,
    pub interior_scores_asymmetric: InteriorScoresAsymmetric,
    pub stack_scores: StackScores,
    pub terminal_mismatch_scores: TerminalMismatchScores,
    pub dangling_scores_left: DanglingScores,
    pub dangling_scores_right: DanglingScores,
    pub helix_close_scores: HelixCloseScores,
    pub basepair_scores: BasepairScores,
    pub interior_scores_explicit: InteriorScoresExplicit,
    pub bulge_scores_0x1: BulgeScores0x1,
    pub interior_scores_1x1: InteriorScores1x1Contra,
    pub multibranch_score_base: Score,
    pub multibranch_score_basepair: Score,
    pub multibranch_score_unpair: Score,
    pub external_score_basepair: Score,
    pub external_score_unpair: Score,
    pub match2match_score: Score,
    pub match2insert_score: Score,
    pub insert_extend_score: Score,
    pub init_match_score: Score,
    pub init_insert_score: Score,
    pub insert_scores: InsertScores,
    pub match_scores: MatchScores,
    pub hairpin_scores_len_cumulative: HairpinScoresLen,
    pub bulge_scores_len_cumulative: BulgeScoresLen,
    pub interior_scores_len_cumulative: InteriorScoresLen,
    pub interior_scores_symmetric_cumulative: InteriorScoresSymmetric,
    pub interior_scores_asymmetric_cumulative: InteriorScoresAsymmetric,

}

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§hairpin_scores_len: HairpinScoresLen§bulge_scores_len: BulgeScoresLen§interior_scores_len: InteriorScoresLen§interior_scores_symmetric: InteriorScoresSymmetric§interior_scores_asymmetric: InteriorScoresAsymmetric§stack_scores: StackScores§terminal_mismatch_scores: TerminalMismatchScores§dangling_scores_left: DanglingScores§dangling_scores_right: DanglingScores§helix_close_scores: HelixCloseScores§basepair_scores: BasepairScores§interior_scores_explicit: InteriorScoresExplicit§bulge_scores_0x1: BulgeScores0x1§interior_scores_1x1: InteriorScores1x1Contra§multibranch_score_base: Score§multibranch_score_basepair: Score§multibranch_score_unpair: Score§external_score_basepair: Score§external_score_unpair: Score§match2match_score: Score§match2insert_score: Score§insert_extend_score: Score§init_match_score: Score§init_insert_score: Score§insert_scores: InsertScores§match_scores: MatchScores§hairpin_scores_len_cumulative: HairpinScoresLen§bulge_scores_len_cumulative: BulgeScoresLen§interior_scores_len_cumulative: InteriorScoresLen§interior_scores_symmetric_cumulative: InteriorScoresSymmetric§interior_scores_asymmetric_cumulative: InteriorScoresAsymmetric

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impl AlignfoldScores

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pub fn load_trained_scores() -> AlignfoldScores

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impl AlignfoldScores

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pub fn load_trained_scores_randinit() -> AlignfoldScores

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impl AlignfoldScores

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pub fn new(init_val: Score) -> AlignfoldScores

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pub fn len(&self) -> usize

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pub fn is_empty(&self) -> bool

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pub fn update_regularizers(&self, regularizers: &mut Regularizers)

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pub fn update<T: HashIndex>( &mut self, train_data: &[TrainDatum<T>], regularizers: &mut Regularizers, )

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pub fn mirror(&mut self)

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pub fn accumulate(&mut self)

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pub fn get_grad<T: HashIndex>( &self, train_data: &[TrainDatum<T>], regularizers: &Regularizers, ) -> Scores

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pub fn get_cost<T: HashIndex>( &self, train_data: &[TrainDatum<T>], regularizers: &Regularizers, ) -> Score

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pub fn rand_init(&mut self)

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pub fn transfer(&mut self)

Trait Implementations§

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impl Clone for AlignfoldScores

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fn clone(&self) -> AlignfoldScores

Returns a duplicate of the value. Read more
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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for AlignfoldScores

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)
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