[−][src]Crate conshomfold
Modules
utils |
Structs
BA_SCORE_MAT | |
BufWriter | Wraps a writer and buffers its output. |
FastaRecord | |
File | A reference to an open file on the filesystem. |
HashMap | A hash map implemented with quadratic probing and SIMD lookup. |
MeaSs | |
Options | A description of the options that a program can handle. |
Path | A slice of a path (akin to |
PctStaProbMats | |
Pool | A threadpool that acts as a handle to a number of threads spawned at construction. |
RIBOSUM_BA_SCORE_MAT | |
RIBOSUM_BPA_SCORE_MAT | |
Reader | A FASTA reader. |
SPECIAL_HL_DELTA_FES | |
SaScoringParams | |
SsFreeEnergyMats | |
SsPartFuncMats | |
SsProbMats | |
StaFeParams | |
StaPartFuncMats | |
StaPartFuncMats4Posterior | |
StaProbMats | |
TmpPartFuncSets | |
TmpPartFuncs |
Constants
Traits
BufRead | A |
Read | The |
Seek | The |
Write | A trait for objects which are byte-oriented sinks. |
Functions
conshomfold | |
consprob | |
convert | |
create_dir | Creates a new, empty directory at the provided path |
from_utf8_unchecked⚠ | Converts a slice of bytes to a string slice without checking that the string contains valid UTF-8. |
get_2_loop_fe | |
get_abs_diff | |
get_bpp_and_unpair_prob_mats | |
get_hl_fe | |
get_max_bp_span | |
get_seq_len_diff | |
get_special_hl_fe | |
get_ss_part_func_mats | |
get_sta_inside_part_func_mats | |
get_sta_inside_part_func_mats_4_posterior | |
get_sta_prob_mats | |
get_sta_prob_mats_4_posterior | |
get_tmp_part_func_set_mat | |
get_tmp_part_func_set_mat_4_posterior | |
invert_bp | |
io_algo_4_prob_mats | |
is_au_or_gu | |
is_canonical | |
is_rna_base | |
logsumexp | |
max | Compares and returns the maximum of two values. |
mccaskill_algo | |
min | Compares and returns the minimum of two values. |
multizip | An iterator that generalizes .zip() and allows running multiple iterators in lockstep. |
pct_of_prob_mats | |
print_program_usage | |
remove_small_bpps_from_bpp_mat | |
scale | |
sumormax | |
write_prob_mat_sets |